RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 OTUD5Q96G74 571 aa25.52■■□□□ 1.68
VPS28-203ENST00000524521 SNCAIPQ9Y6H5 919 aa25.52■■□□□ 1.68
VPS28-203ENST00000524521 ALDH1A1P00352 501 aa25.51■■□□□ 1.67
VPS28-203ENST00000524521 INPP5BP32019 993 aa25.51■■□□□ 1.67
VPS28-203ENST00000524521 SH3BP5LQ7L8J4 393 aa25.51■■□□□ 1.67
VPS28-203ENST00000524521 RFX7Q2KHR2 1363 aa25.51■■□□□ 1.67
VPS28-203ENST00000524521 DDTLA6NHG4 134 aaPredicted RBP25.5■■□□□ 1.67
VPS28-203ENST00000524521 IDH1O75874 414 aaKnown RBP25.5■■□□□ 1.67
VPS28-203ENST00000524521 BAG3O95817 575 aa25.5■■□□□ 1.67
VPS28-203ENST00000524521 ERO1BQ86YB8 467 aa25.5■■□□□ 1.67
VPS28-203ENST00000524521 TEX11Q8IYF3 940 aa25.5■■□□□ 1.67
VPS28-203ENST00000524521 AATFQ9NY61 560 aaKnown RBP eCLIP25.5■■□□□ 1.67
VPS28-203ENST00000524521 ZNF112Q9UJU3 913 aa25.5■■□□□ 1.67
VPS28-203ENST00000524521 SPDYE5A6NIY4 337 aa25.49■■□□□ 1.67
VPS28-203ENST00000524521 IGF2BP3O00425 579 aaKnown RBP eCLIP25.49■■□□□ 1.67
VPS28-203ENST00000524521 IGSF3O75054 1194 aa25.49■■□□□ 1.67
VPS28-203ENST00000524521 OTUD7BQ6GQQ9 843 aa25.49■■□□□ 1.67
VPS28-203ENST00000524521 SH3RF3Q8TEJ3 882 aaPredicted RBP25.49■■□□□ 1.67
VPS28-203ENST00000524521 ANTXR1Q9H6X2 564 aa25.49■■□□□ 1.67
VPS28-203ENST00000524521 NPM3O75607 178 aaKnown RBP25.48■■□□□ 1.67
VPS28-203ENST00000524521 CYP7A1P22680 504 aa25.48■■□□□ 1.67
VPS28-203ENST00000524521 GTF2A2P52657 109 aa25.48■■□□□ 1.67
VPS28-203ENST00000524521 ADGRA1Q86SQ6 560 aa25.48■■□□□ 1.67
VPS28-203ENST00000524521 MS4A4AQ96JQ5 239 aa25.48■■□□□ 1.67
VPS28-203ENST00000524521 LRRCC1Q9C099 1032 aa25.48■■□□□ 1.67
VPS28-203ENST00000524521 MYO5AQ9Y4I1 1855 aaKnown RBP25.48■■□□□ 1.67
VPS28-203ENST00000524521 TESPA1A2RU30 521 aaPredicted RBP25.47■■□□□ 1.67
VPS28-203ENST00000524521 PLCG2P16885 1265 aa25.47■■□□□ 1.67
VPS28-203ENST00000524521 PPP4CP60510 307 aa25.47■■□□□ 1.67
VPS28-203ENST00000524521 DGKZQ13574 1117 aa25.47■■□□□ 1.67
VPS28-203ENST00000524521 PTPN18Q99952 460 aa25.47■■□□□ 1.67
VPS28-203ENST00000524521 R3HDMLQ9H3Y0 253 aa25.47■■□□□ 1.67
VPS28-203ENST00000524521 CCL15-CCL14A0A0B4J2E2 113 aa25.46■■□□□ 1.67
VPS28-203ENST00000524521 GPR25O00155 361 aa25.46■■□□□ 1.67
VPS28-203ENST00000524521 MAP3K12Q12852 859 aa25.46■■□□□ 1.67
VPS28-203ENST00000524521 CCL15Q16663 113 aa25.46■■□□□ 1.67
VPS28-203ENST00000524521 CFHR5Q9BXR6 569 aa25.46■■□□□ 1.67
VPS28-203ENST00000524521 ATRNL1Q5VV63 1379 aa25.45■■□□□ 1.67
VPS28-203ENST00000524521 SMARCA5O60264 1052 aaPredicted RBP25.45■■□□□ 1.66
VPS28-203ENST00000524521 SLURP2P0DP57 97 aa25.45■■□□□ 1.66
VPS28-203ENST00000524521 MAGEB6Q8N7X4 407 aa25.45■■□□□ 1.66
VPS28-203ENST00000524521 ZNF296Q8WUU4 475 aaPredicted RBP25.45■■□□□ 1.66
VPS28-203ENST00000524521 BRI3BPQ8WY22 251 aa25.45■■□□□ 1.66
VPS28-203ENST00000524521 ABHD8Q96I13 439 aa25.45■■□□□ 1.66
VPS28-203ENST00000524521 MCOLN1Q9GZU1 580 aa25.45■■□□□ 1.66
VPS28-203ENST00000524521 OSBPL5Q9H0X9 879 aaPredicted RBP25.45■■□□□ 1.66
VPS28-203ENST00000524521 MAST2Q6P0Q8 1798 aa25.44■■□□□ 1.66
VPS28-203ENST00000524521 PHF20L1A8MW92 1017 aa25.44■■□□□ 1.66
VPS28-203ENST00000524521 IRF6O14896 467 aa25.44■■□□□ 1.66
VPS28-203ENST00000524521 MAP3K10Q02779 954 aa25.44■■□□□ 1.66
VPS28-203ENST00000524521 PPATQ06203 517 aa25.44■■□□□ 1.66
VPS28-203ENST00000524521 PPIL2Q13356 520 aa25.44■■□□□ 1.66
VPS28-203ENST00000524521 TTF1Q15361 905 aaPredicted RBP25.44■■□□□ 1.66
VPS28-203ENST00000524521 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.44■■□□□ 1.66
VPS28-203ENST00000524521 DNAJC2Q99543 621 aaKnown RBP25.44■■□□□ 1.66
VPS28-203ENST00000524521 DCTPP1Q9H773 170 aa25.44■■□□□ 1.66
VPS28-203ENST00000524521 DOCK2Q92608 1830 aa25.43■■□□□ 1.66
VPS28-203ENST00000524521 DYNLL1P63167 89 aaKnown RBP25.43■■□□□ 1.66
VPS28-203ENST00000524521 SNAPC2Q13487 334 aa25.43■■□□□ 1.66
VPS28-203ENST00000524521 NOL9Q5SY16 702 aaKnown RBP25.43■■□□□ 1.66
VPS28-203ENST00000524521 TGFBRAP1Q8WUH2 860 aa25.43■■□□□ 1.66
VPS28-203ENST00000524521 PCDHB15Q9Y5E8 787 aa25.43■■□□□ 1.66
VPS28-203ENST00000524521 LAMB1P07942 1786 aa25.42■■□□□ 1.66
VPS28-203ENST00000524521 GOLIM4O00461 696 aa25.42■■□□□ 1.66
VPS28-203ENST00000524521 CETPP11597 493 aa25.42■■□□□ 1.66
VPS28-203ENST00000524521 NOM1Q5C9Z4 860 aaKnown RBP25.42■■□□□ 1.66
VPS28-203ENST00000524521 MAPKAPK5Q8IW41 473 aa25.42■■□□□ 1.66
VPS28-203ENST00000524521 MIGA1Q8NAN2 632 aa25.42■■□□□ 1.66
VPS28-203ENST00000524521 CRBNQ96SW2 442 aa25.42■■□□□ 1.66
VPS28-203ENST00000524521 BOLA2Q9H3K6 86 aa25.42■■□□□ 1.66
VPS28-203ENST00000524521 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.42■■□□□ 1.66
VPS28-203ENST00000524521 FKTNO75072 461 aa25.41■■□□□ 1.66
VPS28-203ENST00000524521 FAM196BA6NMK8 535 aa25.4■■□□□ 1.66
VPS28-203ENST00000524521 TBC1D12O60347 775 aa25.4■■□□□ 1.66
VPS28-203ENST00000524521 ATP5JP18859 108 aa25.4■■□□□ 1.66
VPS28-203ENST00000524521 CRHR2Q13324 411 aa25.4■■□□□ 1.66
VPS28-203ENST00000524521 CTU1Q7Z7A3 348 aaKnown RBP25.4■■□□□ 1.66
VPS28-203ENST00000524521 SCYL3Q8IZE3 742 aa25.4■■□□□ 1.66
VPS28-203ENST00000524521 PICK1Q9NRD5 415 aa25.4■■□□□ 1.66
VPS28-203ENST00000524521 CTNND1O60716 968 aaKnown RBP25.39■■□□□ 1.66
VPS28-203ENST00000524521 SLC9C2Q5TAH2 1124 aa25.39■■□□□ 1.66
VPS28-203ENST00000524521 TMED8Q6PL24 325 aaPredicted RBP25.39■■□□□ 1.66
VPS28-203ENST00000524521 FAM43AQ8N2R8 423 aa25.39■■□□□ 1.66
VPS28-203ENST00000524521 EDC3Q96F86 508 aaKnown RBP25.39■■□□□ 1.66
VPS28-203ENST00000524521 DHX36Q9H2U1 1008 aaKnown RBP25.39■■□□□ 1.66
VPS28-203ENST00000524521 TAF1CQ15572 869 aaPredicted RBP25.38■■□□□ 1.65
VPS28-203ENST00000524521 CERS3Q8IU89 383 aa25.38■■□□□ 1.65
VPS28-203ENST00000524521 PAG1Q9NWQ8 432 aa25.38■■□□□ 1.65
VPS28-203ENST00000524521 ZHX2Q9Y6X8 837 aa25.38■■□□□ 1.65
VPS28-203ENST00000524521 COL2A1P02458 1487 aaPredicted RBP25.38■■□□□ 1.65
VPS28-203ENST00000524521 FLT1P17948 1338 aa25.37■■□□□ 1.65
VPS28-203ENST00000524521 PTPRAP18433 802 aa25.37■■□□□ 1.65
VPS28-203ENST00000524521 PI4KBQ9UBF8 816 aa25.37■■□□□ 1.65
VPS28-203ENST00000524521 KCNH4Q9UQ05 1017 aa25.37■■□□□ 1.65
VPS28-203ENST00000524521 BTBD19C9JJ37 291 aa25.36■■□□□ 1.65
VPS28-203ENST00000524521 PDE6AP16499 860 aa25.36■■□□□ 1.65
VPS28-203ENST00000524521 USP5P45974 858 aa25.36■■□□□ 1.65
VPS28-203ENST00000524521 HAUS7Q99871 368 aa25.36■■□□□ 1.65
VPS28-203ENST00000524521 ZFYVE28Q9HCC9 887 aa25.36■■□□□ 1.65
VPS28-203ENST00000524521 SAP30BPQ9UHR5 308 aaKnown RBP25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms