RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	AP5Z1	O43299	807 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	KDM4A	O75164	1064 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	SURF6	O75683	361 aa	Known RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	TRIM28	Q13263	835 aa	Known RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	GRAP	Q13588	217 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	AOC3	Q16853	763 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	COL13A1	Q5TAT6	717 aa	Predicted RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	MAP1S	Q66K74	1059 aa	Predicted RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	POTEE	Q6S8J3	1075 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	RIC3	Q7Z5B4	369 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	MPND	Q8N594	471 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	GRAPL	Q8TC17	118 aa	Predicted RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	DNAAF4	Q8WXU2	420 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	RTFDC1	Q9BY42	306 aa	Predicted RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	CHMP4A	Q9BY43	222 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	PHAX	Q9H814	394 aa	Known RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	MKRN1	Q9UHC7	482 aa	Known RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	PRDM4	Q9UKN5	801 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	ZNRF3	Q9ULT6	936 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	SLX4	Q8IY92	1834 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	UTY	O14607	1347 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	ELP1	O95163	1332 aa		9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	DDX60	Q8IY21	1712 aa	Known RBP	9.25	□□□□□ -0.93
SPIDR-223	ENST00000524033	MED23	Q9ULK4	1368 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	DLEC1	Q9Y238	1755 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	ALDH1L1	O75891	902 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	PTMA	P06454	111 aa	Known RBP	9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	EPS15	P42566	896 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	PTH1R	Q03431	593 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	NOLC1	Q14978	699 aa	Known RBP eCLIP	9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	NECTIN1	Q15223	517 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	RBM43	Q6ZSC3	357 aa	Known RBP	9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	TMC4	Q7Z404	712 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	ISCA1	Q9BUE6	129 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	KCNF1	Q9H3M0	494 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	SMC3	Q9UQE7	1217 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	ATP6V1D	Q9Y5K8	247 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	COL11A2	P13942	1736 aa	Predicted RBP	9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	PASK	Q96RG2	1323 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	LAMB4	A4D0S4	1761 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	BCOR	Q6W2J9	1755 aa		9.24	□□□□□ -0.93
SPIDR-223	ENST00000524033	SNED1	Q8TER0	1413 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	TNRC6C	Q9HCJ0	1690 aa	Known RBP	9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	WDR90	Q96KV7	1748 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	MAP4K4	O95819	1239 aa	Predicted RBP	9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	TPM3	P06753	285 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	NBPF7	P0C2Y1	421 aa	Predicted RBP	9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	PDIA4	P13667	645 aa	Known RBP	9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	GJB2	P29033	226 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	SCNN1D	P51172	638 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	CXCL9	Q07325	125 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	TNIP1	Q15025	636 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	SF3B3	Q15393	1217 aa	Known RBP	9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	DIXDC1	Q155Q3	683 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	SWT1	Q5T5J6	900 aa	Known RBP	9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	USP50	Q70EL3	339 aa	Predicted RBP	9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	KIAA1524	Q8TCG1	905 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	RUFY2	Q8WXA3	655 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	FAM13B	Q9NYF5	915 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	SBF1	O95248	1867 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	RFX7	Q2KHR2	1363 aa		9.23	□□□□□ -0.93
SPIDR-223	ENST00000524033	ARFGEF2	Q9Y6D5	1785 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	IRS4	O14654	1257 aa	Predicted RBP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	SRGAP3	O43295	1099 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	RAD17	O75943	681 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	HSPA1A	P0DMV8	641 aa	Known RBP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	HSPA1B	P0DMV9	641 aa	Known RBP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	HSP90B1	P14625	803 aa	Known RBP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	CAST	P20810	708 aa	Known RBP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	RPS8	P62241	208 aa	Known RBP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	LSM11	P83369	360 aa	Known RBP eCLIP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	WASHC4	Q2M389	1173 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	ADCK5	Q3MIX3	580 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	CCDC83	Q8IWF9	413 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	CCDC94	Q9BW85	323 aa	Predicted RBP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	TTC12	Q9H892	705 aa	Predicted RBP	9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	ECHDC1	Q9NTX5	307 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	PDRG1	Q9NUG6	133 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	POLR3E	Q9NVU0	708 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	GPRC5D	Q9NZD1	345 aa		9.22	□□□□□ -0.93
SPIDR-223	ENST00000524033	C6orf229	H3BNL8	230 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	FIBP	O43427	364 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	DDX58	O95786	925 aa	Known RBP	9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	CPA1	P15085	419 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	VEGFB	P49765	207 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	GMPS	P49915	693 aa	Predicted RBP	9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	DNM1	Q05193	864 aa	Known RBP	9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	ME3	Q16798	604 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	DEFB115	Q30KQ5	88 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	TSGA10IP	Q3SY00	556 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	SH3D19	Q5HYK7	790 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	CIAPIN1	Q6FI81	312 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	TTC6	Q86TZ1	520 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	ERC1	Q8IUD2	1116 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	CCDC191	Q8NCU4	936 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	ANKRD7	Q92527	254 aa		9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	CELF1	Q92879	486 aa	Known RBP	9.21	□□□□□ -0.94
SPIDR-223	ENST00000524033	MAP4K1	Q92918	833 aa		9.21	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms