RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TMEM39BQ9GZU3 492 aa18.41■□□□□ 0.54
LSM1-203ENST00000520755 HELLSQ9NRZ9 838 aa18.41■□□□□ 0.54
LSM1-203ENST00000520755 PASKQ96RG2 1323 aa18.41■□□□□ 0.54
LSM1-203ENST00000520755 FOXP2O15409 715 aa18.4■□□□□ 0.54
LSM1-203ENST00000520755 WDHD1O75717 1129 aaPredicted RBP18.4■□□□□ 0.54
LSM1-203ENST00000520755 MBD4O95243 580 aa18.4■□□□□ 0.54
LSM1-203ENST00000520755 LCORLQ8N3X6 602 aa18.4■□□□□ 0.54
LSM1-203ENST00000520755 IDI2Q9BXS1 227 aa18.4■□□□□ 0.54
LSM1-203ENST00000520755 ARMT1Q9H993 441 aa18.4■□□□□ 0.54
LSM1-203ENST00000520755 FAM198AQ9UFP1 575 aa18.4■□□□□ 0.54
LSM1-203ENST00000520755 PPP2R3BQ9Y5P8 575 aa18.4■□□□□ 0.54
LSM1-203ENST00000520755 GPAA1O43292 621 aa18.39■□□□□ 0.53
LSM1-203ENST00000520755 CELF2O95319 508 aaKnown RBP18.39■□□□□ 0.53
LSM1-203ENST00000520755 MCMDC2Q4G0Z9 681 aa18.39■□□□□ 0.53
LSM1-203ENST00000520755 FAM83AQ86UY5 434 aa18.39■□□□□ 0.53
LSM1-203ENST00000520755 CERS3Q8IU89 383 aa18.39■□□□□ 0.53
LSM1-203ENST00000520755 TGFBRAP1Q8WUH2 860 aa18.39■□□□□ 0.53
LSM1-203ENST00000520755 AIDAQ96BJ3 306 aa18.39■□□□□ 0.53
LSM1-203ENST00000520755 DDX4Q9NQI0 724 aaKnown RBP18.39■□□□□ 0.53
LSM1-203ENST00000520755 CCDC171Q6TFL3 1326 aa18.39■□□□□ 0.53
LSM1-203ENST00000520755 MYH8P13535 1937 aa18.39■□□□□ 0.53
LSM1-203ENST00000520755 USP5P45974 858 aa18.38■□□□□ 0.53
LSM1-203ENST00000520755 MAPKAPK5Q8IW41 473 aa18.38■□□□□ 0.53
LSM1-203ENST00000520755 CDAN1Q8IWY9 1227 aa18.38■□□□□ 0.53
LSM1-203ENST00000520755 ZFPM1Q8IX07 1006 aa18.38■□□□□ 0.53
LSM1-203ENST00000520755 FAM151AQ8WW52 585 aa18.38■□□□□ 0.53
LSM1-203ENST00000520755 ENTPD3O75355 529 aa18.37■□□□□ 0.53
LSM1-203ENST00000520755 SEC24BO95487 1268 aa18.37■□□□□ 0.53
LSM1-203ENST00000520755 NBPF12Q5TAG4 269 aaPredicted RBP18.37■□□□□ 0.53
LSM1-203ENST00000520755 VPS53Q5VIR6 699 aa18.37■□□□□ 0.53
LSM1-203ENST00000520755 CASC1Q6TDU7 716 aa18.37■□□□□ 0.53
LSM1-203ENST00000520755 ZSCAN29Q8IWY8 852 aaPredicted RBP18.37■□□□□ 0.53
LSM1-203ENST00000520755 TEPSINQ96N21 525 aa18.37■□□□□ 0.53
LSM1-203ENST00000520755 STRBPQ96SI9 672 aaKnown RBP18.37■□□□□ 0.53
LSM1-203ENST00000520755 CRNKL1Q9BZJ0 848 aaKnown RBP18.37■□□□□ 0.53
LSM1-203ENST00000520755 SSC5DA1L4H1 1573 aa18.36■□□□□ 0.53
LSM1-203ENST00000520755 FLT1P17948 1338 aa18.36■□□□□ 0.53
LSM1-203ENST00000520755 NF2P35240 595 aa18.36■□□□□ 0.53
LSM1-203ENST00000520755 RUFY2Q8WXA3 655 aa18.36■□□□□ 0.53
LSM1-203ENST00000520755 RPAP1Q9BWH6 1393 aaPredicted RBP18.36■□□□□ 0.53
LSM1-203ENST00000520755 OSBPL5Q9H0X9 879 aaPredicted RBP18.36■□□□□ 0.53
LSM1-203ENST00000520755 PRKAB2O43741 272 aa18.35■□□□□ 0.53
LSM1-203ENST00000520755 NPM3O75607 178 aaKnown RBP18.35■□□□□ 0.53
LSM1-203ENST00000520755 APLP1P51693 650 aa18.35■□□□□ 0.53
LSM1-203ENST00000520755 PRKG1Q13976 671 aa18.35■□□□□ 0.53
LSM1-203ENST00000520755 SUPT20HL1Q3ZLR7 823 aa18.35■□□□□ 0.53
LSM1-203ENST00000520755 CST9Q5W186 159 aa18.35■□□□□ 0.53
LSM1-203ENST00000520755 SDR42E1Q8WUS8 393 aa18.35■□□□□ 0.53
LSM1-203ENST00000520755 LSG1Q9H089 658 aaKnown RBP18.35■□□□□ 0.53
LSM1-203ENST00000520755 EPB41L4AQ9HCS5 686 aaPredicted RBP18.35■□□□□ 0.53
LSM1-203ENST00000520755 SAP30BPQ9UHR5 308 aaKnown RBP18.35■□□□□ 0.53
LSM1-203ENST00000520755 SLC4A4Q9Y6R1 1079 aa18.35■□□□□ 0.53
LSM1-203ENST00000520755 PAPPA2Q9BXP8 1791 aa18.35■□□□□ 0.53
LSM1-203ENST00000520755 PTH1RQ03431 593 aa18.34■□□□□ 0.53
LSM1-203ENST00000520755 TTLL12Q14166 644 aaPredicted RBP18.34■□□□□ 0.53
LSM1-203ENST00000520755 SH3BP5LQ7L8J4 393 aa18.34■□□□□ 0.53
LSM1-203ENST00000520755 BACH2Q9BYV9 841 aa18.34■□□□□ 0.53
LSM1-203ENST00000520755 FZD1Q9UP38 647 aa18.34■□□□□ 0.53
LSM1-203ENST00000520755 DDTLA6NHG4 134 aaPredicted RBP18.33■□□□□ 0.52
LSM1-203ENST00000520755 TMEM88BA6NKF7 163 aa18.33■□□□□ 0.52
LSM1-203ENST00000520755 SLC4A8Q2Y0W8 1093 aa18.33■□□□□ 0.52
LSM1-203ENST00000520755 C2orf69Q8N8R5 385 aa18.33■□□□□ 0.52
LSM1-203ENST00000520755 CSRNP1Q96S65 589 aa18.33■□□□□ 0.52
LSM1-203ENST00000520755 GBA2Q9HCG7 927 aaPredicted RBP18.33■□□□□ 0.52
LSM1-203ENST00000520755 OTOFQ9HC10 1997 aa18.33■□□□□ 0.52
LSM1-203ENST00000520755 COL2A1P02458 1487 aaPredicted RBP18.33■□□□□ 0.52
LSM1-203ENST00000520755 GSG1L2A8MUP6 293 aa18.32■□□□□ 0.52
LSM1-203ENST00000520755 HSPD1P10809 573 aaKnown RBP18.32■□□□□ 0.52
LSM1-203ENST00000520755 MOB2Q70IA6 237 aa18.32■□□□□ 0.52
LSM1-203ENST00000520755 PALD1Q9ULE6 856 aa18.32■□□□□ 0.52
LSM1-203ENST00000520755 ABT1Q9ULW3 272 aaKnown RBP18.32■□□□□ 0.52
LSM1-203ENST00000520755 ATRNL1Q5VV63 1379 aa18.31■□□□□ 0.52
LSM1-203ENST00000520755 PPP1R12BO60237 982 aaPredicted RBP18.31■□□□□ 0.52
LSM1-203ENST00000520755 HSPA6P17066 643 aa18.31■□□□□ 0.52
LSM1-203ENST00000520755 MFAP1P55081 439 aaKnown RBP18.31■□□□□ 0.52
LSM1-203ENST00000520755 MIGA2Q7L4E1 593 aa18.31■□□□□ 0.52
LSM1-203ENST00000520755 HOOK2Q96ED9 719 aa18.31■□□□□ 0.52
LSM1-203ENST00000520755 DCP1AQ9NPI6 582 aaPredicted RBP18.31■□□□□ 0.52
LSM1-203ENST00000520755 ANO2Q9NQ90 1003 aa18.31■□□□□ 0.52
LSM1-203ENST00000520755 MKRN1Q9UHC7 482 aaKnown RBP18.31■□□□□ 0.52
LSM1-203ENST00000520755 ANGEL1Q9UNK9 670 aaKnown RBP18.31■□□□□ 0.52
LSM1-203ENST00000520755 APPP05067 770 aa18.3■□□□□ 0.52
LSM1-203ENST00000520755 GNAT2P19087 354 aa18.3■□□□□ 0.52
LSM1-203ENST00000520755 HTRA3P83110 453 aa18.3■□□□□ 0.52
LSM1-203ENST00000520755 DDRGK1Q96HY6 314 aa18.3■□□□□ 0.52
LSM1-203ENST00000520755 DSCC1Q9BVC3 393 aa18.3■□□□□ 0.52
LSM1-203ENST00000520755 DHX36Q9H2U1 1008 aaKnown RBP18.3■□□□□ 0.52
LSM1-203ENST00000520755 CREBZFQ9NS37 354 aa18.3■□□□□ 0.52
LSM1-203ENST00000520755 ATP8A2Q9NTI2 1148 aa18.3■□□□□ 0.52
LSM1-203ENST00000520755 MCM9Q9NXL9 1143 aa18.3■□□□□ 0.52
LSM1-203ENST00000520755 ZMYM6O95789 1325 aa18.29■□□□□ 0.52
LSM1-203ENST00000520755 ATAD5Q96QE3 1844 aa18.29■□□□□ 0.52
LSM1-203ENST00000520755 UBE2Q2LH0YL09 131 aa18.29■□□□□ 0.52
LSM1-203ENST00000520755 POLR3DP05423 398 aaPredicted RBP18.29■□□□□ 0.52
LSM1-203ENST00000520755 HLA-DOAP06340 250 aa18.29■□□□□ 0.52
LSM1-203ENST00000520755 SLURP2P0DP57 97 aa18.29■□□□□ 0.52
LSM1-203ENST00000520755 DCAF15Q66K64 600 aa18.29■□□□□ 0.52
LSM1-203ENST00000520755 ARMC9Q7Z3E5 817 aa18.29■□□□□ 0.52
LSM1-203ENST00000520755 MAP4K1Q92918 833 aa18.29■□□□□ 0.52
LSM1-203ENST00000520755 PATL2C9JE40 543 aaKnown RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms