RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 ADAMTSL1Q8N6G6 1762 aa15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 MYH2Q9UKX2 1941 aa15.49■□□□□ 0.07
LIMCH1-220ENST00000514190 SPDYE2BA6NHP3 402 aa15.48■□□□□ 0.07
LIMCH1-220ENST00000514190 SPDYE6P0CI01 402 aa15.48■□□□□ 0.07
LIMCH1-220ENST00000514190 LMOD1P29536 600 aaPredicted RBP15.48■□□□□ 0.07
LIMCH1-220ENST00000514190 TDO2P48775 406 aa15.48■□□□□ 0.07
LIMCH1-220ENST00000514190 IMMTQ16891 758 aaKnown RBP15.48■□□□□ 0.07
LIMCH1-220ENST00000514190 EAPPQ56P03 285 aaPredicted RBP15.48■□□□□ 0.07
LIMCH1-220ENST00000514190 PNMA8AQ86V59 439 aaPredicted RBP15.48■□□□□ 0.07
LIMCH1-220ENST00000514190 TGFBRAP1Q8WUH2 860 aa15.48■□□□□ 0.07
LIMCH1-220ENST00000514190 SHTN1A0MZ66 631 aa15.47■□□□□ 0.07
LIMCH1-220ENST00000514190 ZNF213O14771 459 aa15.47■□□□□ 0.07
LIMCH1-220ENST00000514190 NPM3O75607 178 aaKnown RBP15.47■□□□□ 0.07
LIMCH1-220ENST00000514190 WDHD1O75717 1129 aaPredicted RBP15.47■□□□□ 0.07
LIMCH1-220ENST00000514190 SBK1Q52WX2 424 aa15.47■□□□□ 0.07
LIMCH1-220ENST00000514190 MICALL2Q8IY33 904 aa15.47■□□□□ 0.07
LIMCH1-220ENST00000514190 MYOZ2Q9NPC6 264 aa15.47■□□□□ 0.07
LIMCH1-220ENST00000514190 TAF6LQ9Y6J9 622 aa15.47■□□□□ 0.07
LIMCH1-220ENST00000514190 USP17L12C9JPN9 530 aa15.46■□□□□ 0.07
LIMCH1-220ENST00000514190 USP17L21D6R901 530 aa15.46■□□□□ 0.07
LIMCH1-220ENST00000514190 H7C1D1 291 aa15.46■□□□□ 0.07
LIMCH1-220ENST00000514190 KRT32Q14532 448 aa15.46■□□□□ 0.07
LIMCH1-220ENST00000514190 CTR9Q6PD62 1173 aa15.46■□□□□ 0.07
LIMCH1-220ENST00000514190 MAPKAPK5Q8IW41 473 aa15.46■□□□□ 0.07
LIMCH1-220ENST00000514190 IDI2Q9BXS1 227 aa15.46■□□□□ 0.07
LIMCH1-220ENST00000514190 TDRD3Q9H7E2 651 aaKnown RBP15.46■□□□□ 0.07
LIMCH1-220ENST00000514190 GPRC5DQ9NZD1 345 aa15.46■□□□□ 0.07
LIMCH1-220ENST00000514190 WNT10BO00744 389 aa15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 EPS15P42566 896 aa15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 HAND2P61296 217 aa15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 HTRA3P83110 453 aa15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 RABEP1Q15276 862 aa15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 DNAJC5GQ8N7S2 189 aa15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 TM6SF1Q9BZW5 370 aa15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 MCM9Q9NXL9 1143 aa15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 ZNF70Q9UC06 446 aaPredicted RBP15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 ANAPC4Q9UJX5 808 aa15.45■□□□□ 0.06
LIMCH1-220ENST00000514190 FLT1P17948 1338 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 MINDY4BA8MYZ0 360 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 PSMA5P28066 241 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 PPARAQ07869 468 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 NFIAQ12857 509 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 ADCK5Q3MIX3 580 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 SPDYE2Q495Y8 402 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 RBM26Q5T8P6 1007 aaKnown RBP15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 C12orf60Q5U649 245 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 FKBP1CQ5VVH2 108 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 SAMD7Q7Z3H4 446 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 NBPF3Q9H094 633 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 DDX4Q9NQI0 724 aaKnown RBP15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 ARPP21Q9UBL0 812 aaPredicted RBP15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 FAM198AQ9UFP1 575 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 CLEC11AQ9Y240 323 aa15.44■□□□□ 0.06
LIMCH1-220ENST00000514190 CYP2D7A0A087X1C5 515 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 E7EWF7 191 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 MYO1BO43795 1136 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 ENTPD3O75355 529 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 CYP2D6P10635 497 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 CACNB3P54284 484 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 PICALMQ13492 652 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 NBPF9Q3BBW0 867 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 TBC1D10BQ4KMP7 808 aaPredicted RBP15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 STOX1Q6ZVD7 989 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 IL27Q8NEV9 243 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 JAKMIP1Q96N16 626 aaKnown RBP15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 OSBPL5Q9H0X9 879 aaPredicted RBP15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 ZSWIM6Q9HCJ5 1215 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 TMOD2Q9NZR1 351 aa15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 SAP30BPQ9UHR5 308 aaKnown RBP15.43■□□□□ 0.06
LIMCH1-220ENST00000514190 CLRN2A0PK11 232 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 EGFRP00533 1210 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 POLR3DP05423 398 aaPredicted RBP15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 FGRP09769 529 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 CTDSPL2Q05D32 466 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 KIF4BQ2VIQ3 1234 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 AKNAD1Q5T1N1 836 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 USP50Q70EL3 339 aaPredicted RBP15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 TBC1D10CQ8IV04 446 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 ZFPM1Q8IX07 1006 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 AMOTL1Q8IY63 956 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 NEK1Q96PY6 1258 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 ADARB2Q9NS39 739 aaKnown RBP15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 PASKQ96RG2 1323 aa15.42■□□□□ 0.06
LIMCH1-220ENST00000514190 PCNTO95613 3336 aa15.41■□□□□ 0.06
LIMCH1-220ENST00000514190 ITGBL1O95965 494 aaPredicted RBP15.41■□□□□ 0.06
LIMCH1-220ENST00000514190 SLC3A2P08195 630 aaKnown RBP15.41■□□□□ 0.06
LIMCH1-220ENST00000514190 PLCD1P51178 756 aa15.41■□□□□ 0.06
LIMCH1-220ENST00000514190 TTC6Q86TZ1 520 aa15.41■□□□□ 0.06
LIMCH1-220ENST00000514190 STAG1Q8WVM7 1258 aa15.41■□□□□ 0.06
LIMCH1-220ENST00000514190 KLRG1Q96E93 195 aa15.41■□□□□ 0.06
LIMCH1-220ENST00000514190 RNF41Q9H4P4 317 aaPredicted RBP15.41■□□□□ 0.06
LIMCH1-220ENST00000514190 TACC3Q9Y6A5 838 aa15.41■□□□□ 0.06
LIMCH1-220ENST00000514190 SMIM22K7EJ46 135 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 HMGB1P09429 215 aaKnown RBP15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 PCP11498 1178 aaKnown RBP15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 CASTP20810 708 aaKnown RBP15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 NEK4P51957 841 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 TCP10Q12799 353 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 TRDNQ13061 729 aa15.4■□□□□ 0.06
LIMCH1-220ENST00000514190 MAP1SQ66K74 1059 aaPredicted RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms