RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, human

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-216	ENST00000513562	UTY	O14607	1347 aa		13.78	□□□□□ -0.2
DDX41-216	ENST00000513562	PTPRA	P18433	802 aa		13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	FGFR2	P21802	821 aa		13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	PUM3	Q15397	648 aa	Known RBP	13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	DIXDC1	Q155Q3	683 aa		13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	ANKRD44	Q8N8A2	993 aa		13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	WDR66	Q8TBY9	1149 aa		13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	BICC1	Q9H694	974 aa	Known RBP	13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	PICK1	Q9NRD5	415 aa		13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	MTMR10	Q9NXD2	777 aa		13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.77	□□□□□ -0.21
DDX41-216	ENST00000513562	IFIT1	P09914	478 aa	Known RBP	13.76	□□□□□ -0.21
DDX41-216	ENST00000513562	SLC4A10	Q6U841	1118 aa		13.76	□□□□□ -0.21
DDX41-216	ENST00000513562	GADL1	Q6ZQY3	521 aa		13.76	□□□□□ -0.21
DDX41-216	ENST00000513562	ZFPM1	Q8IX07	1006 aa		13.76	□□□□□ -0.21
DDX41-216	ENST00000513562	TDH	Q8IZJ6	230 aa		13.76	□□□□□ -0.21
DDX41-216	ENST00000513562	COA7	Q96BR5	231 aa		13.76	□□□□□ -0.21
DDX41-216	ENST00000513562	RFX7	Q2KHR2	1363 aa		13.75	□□□□□ -0.21
DDX41-216	ENST00000513562	MAGEA10	P43363	369 aa	Predicted RBP	13.75	□□□□□ -0.21
DDX41-216	ENST00000513562	FAM110C	Q1W6H9	321 aa		13.75	□□□□□ -0.21
DDX41-216	ENST00000513562	USP40	Q9NVE5	1235 aa		13.75	□□□□□ -0.21
DDX41-216	ENST00000513562	TAOK2	Q9UL54	1235 aa		13.75	□□□□□ -0.21
DDX41-216	ENST00000513562	HMGCR	P04035	888 aa		13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	PRDX5	P30044	214 aa		13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	MAP3K10	Q02779	954 aa		13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	WDR63	Q8IWG1	891 aa		13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	ANKRD13C	Q8N6S4	541 aa		13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	KLHDC4	Q8TBB5	520 aa		13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	NBPF3	Q9H094	633 aa		13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	AGTPBP1	Q9UPW5	1226 aa		13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	VCAN	P13611	3396 aa		13.74	□□□□□ -0.21
DDX41-216	ENST00000513562	RPTOR	Q8N122	1335 aa		13.73	□□□□□ -0.21
DDX41-216	ENST00000513562	TRIM75P	A6NK02	468 aa		13.73	□□□□□ -0.21
DDX41-216	ENST00000513562	ENTPD3	O75355	529 aa		13.73	□□□□□ -0.21
DDX41-216	ENST00000513562	SYN1	P17600	705 aa		13.73	□□□□□ -0.21
DDX41-216	ENST00000513562	ZEB1	P37275	1124 aa	Predicted RBP	13.73	□□□□□ -0.21
DDX41-216	ENST00000513562	SH3BP5L	Q7L8J4	393 aa		13.73	□□□□□ -0.21
DDX41-216	ENST00000513562	LPIN2	Q92539	896 aa		13.73	□□□□□ -0.21
DDX41-216	ENST00000513562	IDI2	Q9BXS1	227 aa		13.73	□□□□□ -0.21
DDX41-216	ENST00000513562	C11orf49	Q9H6J7	331 aa		13.73	□□□□□ -0.21
DDX41-216	ENST00000513562	SALL1	Q9NSC2	1324 aa		13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	CTNND1	O60716	968 aa	Known RBP	13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	LDHB	P07195	334 aa	Known RBP	13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	SLC5A1	P13866	664 aa		13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	RGS3	P49796	1198 aa		13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	CCDC184	Q52MB2	194 aa		13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	PNMA3	Q9UL41	463 aa		13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	OGDHL	Q9ULD0	1010 aa		13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	LRRFIP2	Q9Y608	721 aa	Known RBP	13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	MGAM	O43451	1857 aa		13.72	□□□□□ -0.21
DDX41-216	ENST00000513562	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.71	□□□□□ -0.21
DDX41-216	ENST00000513562	TREML2	Q5T2D2	321 aa		13.71	□□□□□ -0.21
DDX41-216	ENST00000513562	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
DDX41-216	ENST00000513562	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX41-216	ENST00000513562	UBE2O	Q9C0C9	1292 aa	Known RBP	13.71	□□□□□ -0.21
DDX41-216	ENST00000513562	HMX1	Q9NP08	348 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX41-216	ENST00000513562	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.71	□□□□□ -0.21
DDX41-216	ENST00000513562	GJD2	Q9UKL4	321 aa		13.71	□□□□□ -0.21
DDX41-216	ENST00000513562	CACNA1F	O60840	1977 aa		13.71	□□□□□ -0.22
DDX41-216	ENST00000513562	ALPK3	Q96L96	1907 aa		13.7	□□□□□ -0.22
DDX41-216	ENST00000513562	GAK	O14976	1311 aa		13.7	□□□□□ -0.22
DDX41-216	ENST00000513562	PFAS	O15067	1338 aa		13.7	□□□□□ -0.22
DDX41-216	ENST00000513562	DDTL	A6NHG4	134 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX41-216	ENST00000513562	EYA2	O00167	538 aa		13.7	□□□□□ -0.22
DDX41-216	ENST00000513562	SLURP2	P0DP57	97 aa		13.7	□□□□□ -0.22
DDX41-216	ENST00000513562	GCLC	P48506	637 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX41-216	ENST00000513562	TRIM32	Q13049	653 aa		13.7	□□□□□ -0.22
DDX41-216	ENST00000513562	CCDC84	Q86UT8	332 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX41-216	ENST00000513562	RFX5	P48382	616 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX41-216	ENST00000513562	MAP3K21	Q5TCX8	1036 aa		13.69	□□□□□ -0.22
DDX41-216	ENST00000513562	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX41-216	ENST00000513562	COL2A1	P02458	1487 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	SEMA3E	O15041	775 aa		13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	ZBTB22	O15209	634 aa		13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	COL6A1	P12109	1028 aa		13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	FAM109B	Q6ICB4	259 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	ATG9A	Q7Z3C6	839 aa		13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	TRIB2	Q92519	343 aa		13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	DDX4	Q9NQI0	724 aa	Known RBP	13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	GNL3L	Q9NVN8	582 aa	Known RBP	13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	DENND2A	Q9ULE3	1009 aa		13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	EYS	Q5T1H1	3165 aa		13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	LAMA2	P24043	3122 aa	Known RBP	13.68	□□□□□ -0.22
DDX41-216	ENST00000513562	DOCK2	Q92608	1830 aa		13.67	□□□□□ -0.22
DDX41-216	ENST00000513562	POTEB2	H3BUK9	544 aa		13.67	□□□□□ -0.22
DDX41-216	ENST00000513562	TBC1D12	O60347	775 aa		13.67	□□□□□ -0.22
DDX41-216	ENST00000513562	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
DDX41-216	ENST00000513562	ZGPAT	Q8N5A5	531 aa	Known RBP	13.67	□□□□□ -0.22
DDX41-216	ENST00000513562	GUCD1	Q96NT3	240 aa		13.67	□□□□□ -0.22
DDX41-216	ENST00000513562	SALL2	Q9Y467	1007 aa	Predicted RBP	13.67	□□□□□ -0.22
DDX41-216	ENST00000513562	DDX60L	Q5H9U9	1706 aa	Known RBP	13.67	□□□□□ -0.22
DDX41-216	ENST00000513562	PRKAR2A	P13861	404 aa	Known RBP	13.66	□□□□□ -0.22
DDX41-216	ENST00000513562	PICALM	Q13492	652 aa		13.66	□□□□□ -0.22
DDX41-216	ENST00000513562	ATP2B3	Q16720	1220 aa		13.66	□□□□□ -0.22
DDX41-216	ENST00000513562	ZNF280C	Q8ND82	737 aa		13.66	□□□□□ -0.22
DDX41-216	ENST00000513562	FAM163A	Q96GL9	167 aa	Predicted RBP	13.66	□□□□□ -0.22
DDX41-216	ENST00000513562	TBC1D2	Q9BYX2	928 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 17 ms