RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 BABAM1Q9NWV8 329 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 NFE2L3Q9Y4A8 694 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 CYP7A1P22680 504 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 UBXN1Q04323 297 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 IFT81Q8WYA0 676 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 SEPT11Q9NVA2 429 aaKnown RBP12.67□□□□□ -0.38
TCOF1-211ENST00000513346 HLA-DOAP06340 250 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 KIF5BP33176 963 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 SSR1P43307 286 aaKnown RBP12.67□□□□□ -0.38
TCOF1-211ENST00000513346 MAGEA9P43362 315 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 BCORL1Q5H9F3 1711 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 IDEP14735 1019 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 NOP2P46087 812 aaKnown RBP12.66□□□□□ -0.38
TCOF1-211ENST00000513346 TRIM14Q14142 442 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 TNIP1Q15025 636 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 CHST3Q7LGC8 479 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 TAOK3Q9H2K8 898 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 TPCN1Q9ULQ1 816 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 IRS4O14654 1257 aaPredicted RBP12.66□□□□□ -0.38
TCOF1-211ENST00000513346 NBPF7P0C2Y1 421 aaPredicted RBP12.66□□□□□ -0.38
TCOF1-211ENST00000513346 SLC4A8Q2Y0W8 1093 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 SIRT2Q8IXJ6 389 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 BCAS4Q8TDM0 211 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 KCNH3Q9ULD8 1083 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 SPATS2Q86XZ4 545 aaKnown RBP12.66□□□□□ -0.38
TCOF1-211ENST00000513346 CCDC155Q8N6L0 562 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 RPGRIP1Q96KN7 1286 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 FAM227BQ96M60 508 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 RAB34Q9BZG1 259 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 HOXB7P09629 217 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 GSTO1P78417 241 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 TTLL12Q14166 644 aaPredicted RBP12.66□□□□□ -0.38
TCOF1-211ENST00000513346 SLC9C2Q5TAH2 1124 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 SRGAP1Q7Z6B7 1085 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 IL17REQ8NFR9 667 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 KAT14Q9H8E8 782 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 CABP5Q9NP86 173 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 STX8Q9UNK0 236 aa12.66□□□□□ -0.38
TCOF1-211ENST00000513346 RXRBP28702 533 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 UBA7P41226 1012 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 ADKP55263 362 aaKnown RBP12.65□□□□□ -0.38
TCOF1-211ENST00000513346 IFI16Q16666 785 aaKnown RBP12.65□□□□□ -0.38
TCOF1-211ENST00000513346 ZNF710Q8N1W2 664 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 PSMA7O14818 248 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 NEBLO76041 1014 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 GNGT1P63211 74 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 RBM6P78332 1123 aaKnown RBP12.65□□□□□ -0.38
TCOF1-211ENST00000513346 TFCP2Q12800 502 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 KLHDC4Q8TBB5 520 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 CUL5Q93034 780 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 FAM204AQ9H8W3 233 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 QTRT2Q9H974 415 aaKnown RBP12.65□□□□□ -0.38
TCOF1-211ENST00000513346 CCNL1Q9UK58 526 aaPredicted RBP12.65□□□□□ -0.38
TCOF1-211ENST00000513346 SYNMO15061 1565 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 SND1Q7KZF4 910 aaKnown RBP eCLIP12.65□□□□□ -0.38
TCOF1-211ENST00000513346 RPAINQ86UA6 219 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 USP28Q96RU2 1077 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 PARD6BQ9BYG5 372 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 VAT1LQ9HCJ6 419 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 STAP2Q9UGK3 403 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 ADAM21Q9UKJ8 722 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 FAN1Q9Y2M0 1017 aa12.65□□□□□ -0.38
TCOF1-211ENST00000513346 ANKRD62A6NC57 917 aa12.65□□□□□ -0.39
TCOF1-211ENST00000513346 CTIFO43310 598 aaKnown RBP12.65□□□□□ -0.39
TCOF1-211ENST00000513346 E2F4Q16254 413 aa12.65□□□□□ -0.39
TCOF1-211ENST00000513346 WDR78Q5VTH9 848 aa12.65□□□□□ -0.39
TCOF1-211ENST00000513346 C11orf57Q6ZUT1 292 aaPredicted RBP12.65□□□□□ -0.39
TCOF1-211ENST00000513346 HELBQ8NG08 1087 aaPredicted RBP12.65□□□□□ -0.39
TCOF1-211ENST00000513346 CABS1Q96KC9 395 aa12.65□□□□□ -0.39
TCOF1-211ENST00000513346 SELENOOQ9BVL4 669 aa12.65□□□□□ -0.39
TCOF1-211ENST00000513346 ARHGAP31Q2M1Z3 1444 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 STX10O60499 249 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 AMPD3Q01432 767 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 CEP85LQ5SZL2 805 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 TRAPPC3LQ5T215 181 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 RASEFQ8IZ41 740 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 TRIM75PA6NK02 468 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 DDIT3P35638 169 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 LRCH2Q5VUJ6 765 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 DESI2Q9BSY9 194 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 CAPS2Q9BXY5 557 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 TSGA10Q9BZW7 698 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 CDC23Q9UJX2 597 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 CCT5P48643 541 aa12.64□□□□□ -0.39
TCOF1-211ENST00000513346 EIF4A1P60842 406 aaKnown RBP12.64□□□□□ -0.39
TCOF1-211ENST00000513346 NCOA5Q9HCD5 579 aaKnown RBP12.64□□□□□ -0.39
TCOF1-211ENST00000513346 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.64□□□□□ -0.392e-6■■■■■ 129.4
TCOF1-211ENST00000513346 CUTAO60888 179 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 CYP2C19P33261 490 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 CCT6AP40227 531 aaKnown RBP12.63□□□□□ -0.39
TCOF1-211ENST00000513346 PTH1RQ03431 593 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 TMEM266Q2M3C6 531 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 MCTP2Q6DN12 878 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 SARM1Q6SZW1 724 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 PAG1Q9NWQ8 432 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 SAMD15Q9P1V8 674 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 SLC4A4Q9Y6R1 1079 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 KIAA0232Q92628 1395 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 KCNQ3O43525 872 aa12.63□□□□□ -0.39
TCOF1-211ENST00000513346 HPDP32754 393 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms