RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 GINS2Q9Y248 185 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 UGGT1Q9NYU2 1555 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 POTEB2H3BUK9 544 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 CASQ1P31415 396 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 YARSP54577 528 aaKnown RBP4.78□□□□□ -1.64
VCAN-209ENST00000513016 NONOQ15233 471 aaKnown RBP eCLIP4.78□□□□□ -1.64
VCAN-209ENST00000513016 DOK7Q18PE1 504 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 ERFEQ4G0M1 354 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 KIFC2Q96AC6 838 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 ZNF496Q96IT1 587 aaPredicted RBP4.78□□□□□ -1.64
VCAN-209ENST00000513016 USP25Q9UHP3 1055 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 RASAL2Q9UJF2 1139 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 EFCAB6Q5THR3 1501 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 ZNF335Q9H4Z2 1342 aaPredicted RBP4.78□□□□□ -1.64
VCAN-209ENST00000513016 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.78□□□□□ -1.64
VCAN-209ENST00000513016 TNNT1P13805 278 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 KIF11P52732 1056 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 PRPF4BQ13523 1007 aaKnown RBP4.78□□□□□ -1.64
VCAN-209ENST00000513016 RAB3IL1Q8TBN0 382 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 MAK16Q9BXY0 300 aaKnown RBP4.78□□□□□ -1.64
VCAN-209ENST00000513016 ARMT1Q9H993 441 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 INSRP06213 1382 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 SBNO2Q9Y2G9 1366 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 CRKLP46109 303 aaKnown RBP4.78□□□□□ -1.64
VCAN-209ENST00000513016 MAPKAPK5Q8IW41 473 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 TGFBRAP1Q8WUH2 860 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 CCDC94Q9BW85 323 aaPredicted RBP4.78□□□□□ -1.64
VCAN-209ENST00000513016 BACH2Q9BYV9 841 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 POLR2MP0CAP2 368 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 NUCB1Q02818 461 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 VWA3BQ502W6 1294 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 RAB11FIP4Q86YS3 637 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 DEPTORQ8TB45 409 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 DNM3Q9UQ16 869 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 TRPC6Q9Y210 931 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 RABGAP1Q9Y3P9 1069 aa4.78□□□□□ -1.64
VCAN-209ENST00000513016 STK10O94804 968 aaKnown RBP4.78□□□□□ -1.65
VCAN-209ENST00000513016 CFBP00751 764 aa4.78□□□□□ -1.65
VCAN-209ENST00000513016 VIMP08670 466 aaKnown RBP4.78□□□□□ -1.65
VCAN-209ENST00000513016 NT5C2P49902 561 aa4.78□□□□□ -1.65
VCAN-209ENST00000513016 ARID5AQ03989 594 aa4.78□□□□□ -1.65
VCAN-209ENST00000513016 TFDP1Q14186 410 aa4.78□□□□□ -1.65
VCAN-209ENST00000513016 LETM2Q2VYF4 491 aa4.78□□□□□ -1.65
VCAN-209ENST00000513016 MRPS27Q92552 414 aaKnown RBP4.78□□□□□ -1.65
VCAN-209ENST00000513016 PANK2Q9BZ23 570 aa4.78□□□□□ -1.65
VCAN-209ENST00000513016 CSRNP2Q9H175 543 aa4.78□□□□□ -1.65
VCAN-209ENST00000513016 PARD3Q8TEW0 1356 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 PRPF6O94906 941 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 FMNL1O95466 1100 aaPredicted RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 EEF2P13639 858 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 LIN9Q5TKA1 542 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 KIAA0825Q8IV33 1275 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 PKD2L1Q9P0L9 805 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 KIF24Q5T7B8 1368 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 KIAA0232Q92628 1395 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 RPS6KA4O75676 772 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 HARSP12081 509 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 ALAS1P13196 640 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 NEK11Q8NG66 645 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 PPP1R14CQ8TAE6 165 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 STIM2Q9P246 746 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 FAM169AQ9Y6X4 670 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CTTNBP2Q8WZ74 1663 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 ZNF804BA4D1E1 1349 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 AOX1Q06278 1338 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 ERVV-1B6SEH8 477 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 FOSP01100 380 aaPredicted RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 EIF4A1P60842 406 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 CFAP58Q5T655 872 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CEP128Q6ZU80 1094 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CHST3Q7LGC8 479 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CCDC155Q8N6L0 562 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CDHR1Q96JP9 859 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 DHX36Q9H2U1 1008 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 TXNDC16Q9P2K2 825 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 MAST1Q9Y2H9 1570 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 UQCRHP07919 91 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 TIMM10P62072 90 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CKAP4Q07065 602 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 CAMK4Q16566 473 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 ABCB5Q2M3G0 1257 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 RILPL1Q5EBL4 403 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 TBC1D9Q6ZT07 1266 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 UBXN4Q92575 508 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 COA7Q96BR5 231 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 RPS6KC1Q96S38 1066 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CCDC113Q9H0I3 377 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 LGR6Q9HBX8 967 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 TFIP11Q9UBB9 837 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 DAPK3O43293 454 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 ATP2A2P16615 1042 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 ARL1P40616 181 aaPredicted RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 AFMP43652 599 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 UTP14CQ5TAP6 766 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 ARHGEF25Q86VW2 580 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 FBXO11Q86XK2 927 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CCDC24Q8N4L8 307 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 CPLX3Q8WVH0 158 aa4.77□□□□□ -1.65
VCAN-209ENST00000513016 PRPF31Q8WWY3 499 aaKnown RBP4.77□□□□□ -1.65
VCAN-209ENST00000513016 MIS12Q9H081 205 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms