RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 CACNB3P54284 484 aa12.18□□□□□ -0.46
CLCN3-208ENST00000512813 CACNB2Q08289 660 aaPredicted RBP12.18□□□□□ -0.46
CLCN3-208ENST00000512813 FKBP1CQ5VVH2 108 aa12.18□□□□□ -0.46
CLCN3-208ENST00000512813 PRDM5Q9NQX1 630 aaPredicted RBP12.18□□□□□ -0.46
CLCN3-208ENST00000512813 BABAM1Q9NWV8 329 aa12.18□□□□□ -0.46
CLCN3-208ENST00000512813 ATP11BQ9Y2G3 1177 aa12.18□□□□□ -0.46
CLCN3-208ENST00000512813 CACNA1GO43497 2377 aa12.18□□□□□ -0.46
CLCN3-208ENST00000512813 XRCC5P13010 732 aaKnown RBP12.17□□□□□ -0.46
CLCN3-208ENST00000512813 CACNB1Q02641 598 aaPredicted RBP12.17□□□□□ -0.46
CLCN3-208ENST00000512813 MFSD14BQ5SR56 506 aa12.17□□□□□ -0.46
CLCN3-208ENST00000512813 GADL1Q6ZQY3 521 aa12.17□□□□□ -0.46
CLCN3-208ENST00000512813 MIGA2Q7L4E1 593 aa12.17□□□□□ -0.46
CLCN3-208ENST00000512813 TRMT44Q8IYL2 757 aaKnown RBP12.17□□□□□ -0.46
CLCN3-208ENST00000512813 JARID2Q92833 1246 aaPredicted RBP12.17□□□□□ -0.46
CLCN3-208ENST00000512813 FBXL18Q96ME1 805 aa12.17□□□□□ -0.46
CLCN3-208ENST00000512813 PDLIM7Q9NR12 457 aa12.17□□□□□ -0.46
CLCN3-208ENST00000512813 TRANK1O15050 2925 aa12.17□□□□□ -0.46
CLCN3-208ENST00000512813 EPG5Q9HCE0 2579 aa12.16□□□□□ -0.46
CLCN3-208ENST00000512813 EPHB4P54760 987 aa12.16□□□□□ -0.46
CLCN3-208ENST00000512813 NFE2L2Q16236 605 aa12.16□□□□□ -0.46
CLCN3-208ENST00000512813 CWC25Q9NXE8 425 aaPredicted RBP12.16□□□□□ -0.46
CLCN3-208ENST00000512813 DBF4Q9UBU7 674 aaPredicted RBP12.16□□□□□ -0.46
CLCN3-208ENST00000512813 PKD1L2Q7Z442 2459 aa12.15□□□□□ -0.46
CLCN3-208ENST00000512813 DNM1LO00429 736 aa12.15□□□□□ -0.46
CLCN3-208ENST00000512813 ERC2O15083 957 aa12.15□□□□□ -0.46
CLCN3-208ENST00000512813 HSPA5P11021 654 aaKnown RBP12.15□□□□□ -0.46
CLCN3-208ENST00000512813 ZKSCAN1P17029 563 aaPredicted RBP12.15□□□□□ -0.46
CLCN3-208ENST00000512813 IGFBP4P22692 258 aa12.15□□□□□ -0.46
CLCN3-208ENST00000512813 CHRNDQ07001 517 aa12.15□□□□□ -0.46
CLCN3-208ENST00000512813 HYPKQ9NX55 129 aa12.15□□□□□ -0.46
CLCN3-208ENST00000512813 TMOD2Q9NZR1 351 aa12.15□□□□□ -0.46
CLCN3-208ENST00000512813 AGTPBP1Q9UPW5 1226 aa12.15□□□□□ -0.46
CLCN3-208ENST00000512813 TRIM43BA6NCK2 446 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 SNAP23O00161 211 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 NEFMP07197 916 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 CYP2B6P20813 491 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 GCLCP48506 637 aaPredicted RBP12.14□□□□□ -0.47
CLCN3-208ENST00000512813 SNX17Q15036 470 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 HDGFL1Q5TGJ6 251 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 SOCS4Q8WXH5 440 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 TRIM43Q96BQ3 446 aaPredicted RBP12.14□□□□□ -0.47
CLCN3-208ENST00000512813 MYD88Q99836 296 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 PBX4Q9BYU1 374 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 PNMA3Q9UL41 463 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 ZNF318Q5VUA4 2279 aa12.14□□□□□ -0.47
CLCN3-208ENST00000512813 PLXNA1Q9UIW2 1896 aa12.13□□□□□ -0.47
CLCN3-208ENST00000512813 TLL1O43897 1013 aa12.13□□□□□ -0.47
CLCN3-208ENST00000512813 HDLBPQ00341 1268 aaKnown RBP12.13□□□□□ -0.47
CLCN3-208ENST00000512813 GOLGA2Q08379 1002 aa12.13□□□□□ -0.47
CLCN3-208ENST00000512813 SH3RF1Q7Z6J0 888 aa12.13□□□□□ -0.47
CLCN3-208ENST00000512813 MPHOSPH8Q99549 860 aa12.13□□□□□ -0.47
CLCN3-208ENST00000512813 AFG3L2Q9Y4W6 797 aa12.13□□□□□ -0.47
CLCN3-208ENST00000512813 ZHX2Q9Y6X8 837 aa12.13□□□□□ -0.47
CLCN3-208ENST00000512813 PHIPQ8WWQ0 1821 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 HOXB7P09629 217 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 ITGB8P26012 769 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 PBX2P40425 430 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 KRT24Q2M2I5 525 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 TRIM60Q495X7 471 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 SLC39A5Q6ZMH5 540 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 LPAR1Q92633 364 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 NUDT12Q9BQG2 462 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 DAGLAQ9Y4D2 1042 aa12.12□□□□□ -0.47
CLCN3-208ENST00000512813 C5orf42Q9H799 3197 aa12.11□□□□□ -0.47
CLCN3-208ENST00000512813 LOC285556D6RIA3 1793 aa12.11□□□□□ -0.47
CLCN3-208ENST00000512813 MSCO60682 206 aa12.11□□□□□ -0.47
CLCN3-208ENST00000512813 SCYL3Q8IZE3 742 aa12.11□□□□□ -0.47
CLCN3-208ENST00000512813 HERVK_113Q902F9 699 aa12.11□□□□□ -0.47
CLCN3-208ENST00000512813 BAHCC1Q9P281 2608 aa12.11□□□□□ -0.47
CLCN3-208ENST00000512813 KMT2BQ9UMN6 2715 aaPredicted RBP12.1□□□□□ -0.47
CLCN3-208ENST00000512813 ZFHX2Q9C0A1 2572 aaPredicted RBP12.1□□□□□ -0.47
CLCN3-208ENST00000512813 TAF5LO75529 589 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 PTPRAP18433 802 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 ITGA6P23229 1130 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 FPGSQ05932 587 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 TREML2Q5T2D2 321 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 TDRD7Q8NHU6 1098 aaKnown RBP12.1□□□□□ -0.47
CLCN3-208ENST00000512813 USP6NLQ92738 828 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 TEKT1Q969V4 418 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 ZDHHC15Q96MV8 337 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 UIMC1Q96RL1 719 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 PLEKHF1Q96S99 279 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 SPINK5Q9NQ38 1064 aaPredicted RBP12.1□□□□□ -0.47
CLCN3-208ENST00000512813 PICK1Q9NRD5 415 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 MORF4L1Q9UBU8 362 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 DDX20Q9UHI6 824 aaKnown RBP12.1□□□□□ -0.47
CLCN3-208ENST00000512813 DOCK1Q14185 1865 aa12.1□□□□□ -0.47
CLCN3-208ENST00000512813 MYBBP1AQ9BQG0 1328 aaKnown RBP12.1□□□□□ -0.47
CLCN3-208ENST00000512813 CCL14Q16627 93 aa12.09□□□□□ -0.47
CLCN3-208ENST00000512813 C1orf53Q5VUE5 145 aa12.09□□□□□ -0.47
CLCN3-208ENST00000512813 CCDC129Q6ZRS4 1044 aa12.09□□□□□ -0.47
CLCN3-208ENST00000512813 FAM151AQ8WW52 585 aa12.09□□□□□ -0.47
CLCN3-208ENST00000512813 APBA2Q99767 749 aa12.09□□□□□ -0.47
CLCN3-208ENST00000512813 CD320Q9NPF0 282 aa12.09□□□□□ -0.47
CLCN3-208ENST00000512813 COG5Q9UP83 839 aa12.09□□□□□ -0.47
CLCN3-208ENST00000512813 TACC3Q9Y6A5 838 aa12.09□□□□□ -0.47
CLCN3-208ENST00000512813 ATRNL1Q5VV63 1379 aa12.08□□□□□ -0.48
CLCN3-208ENST00000512813 RGS2P41220 211 aa12.08□□□□□ -0.48
CLCN3-208ENST00000512813 SKIV2LQ15477 1246 aaKnown RBP12.08□□□□□ -0.48
CLCN3-208ENST00000512813 RAB30Q15771 203 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms