RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 ZNF287Q9HBT7 754 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 NEDD4P46934 1319 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 MYH2Q9UKX2 1941 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 USP17L12C9JPN9 530 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 USP17L21D6R901 530 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 HMGN5P82970 282 aaKnown RBP17.9■□□□□ 0.46
SCLT1-209ENST00000511426 PDE4BQ07343 736 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 NFKBIBQ15653 356 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 AOC3Q16853 763 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 CERS5Q8N5B7 392 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 TEKT1Q969V4 418 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 TTF2Q9UNY4 1162 aaKnown RBP17.9■□□□□ 0.46
SCLT1-209ENST00000511426 DAGLAQ9Y4D2 1042 aa17.9■□□□□ 0.46
SCLT1-209ENST00000511426 WDR33Q9C0J8 1336 aaKnown RBP17.89■□□□□ 0.46
SCLT1-209ENST00000511426 CHD4Q14839 1912 aa17.89■□□□□ 0.45
SCLT1-209ENST00000511426 BRCA1P38398 1863 aaKnown RBP17.89■□□□□ 0.45
SCLT1-209ENST00000511426 ERICH2A1L162 156 aa17.89■□□□□ 0.45
SCLT1-209ENST00000511426 MINDY4BA8MYZ0 360 aa17.89■□□□□ 0.45
SCLT1-209ENST00000511426 B4E1Z4 1266 aa17.89■□□□□ 0.45
SCLT1-209ENST00000511426 SH2B2O14492 632 aaPredicted RBP17.89■□□□□ 0.45
SCLT1-209ENST00000511426 MMP14P50281 582 aa17.88■□□□□ 0.45
SCLT1-209ENST00000511426 RHBDL3P58872 404 aa17.88■□□□□ 0.45
SCLT1-209ENST00000511426 CTDSPL2Q05D32 466 aa17.88■□□□□ 0.45
SCLT1-209ENST00000511426 ST3GAL1Q11201 340 aa17.88■□□□□ 0.45
SCLT1-209ENST00000511426 TEX11Q8IYF3 940 aa17.88■□□□□ 0.45
SCLT1-209ENST00000511426 RGS22Q8NE09 1264 aa17.88■□□□□ 0.45
SCLT1-209ENST00000511426 SH3RF3Q8TEJ3 882 aaPredicted RBP17.88■□□□□ 0.45
SCLT1-209ENST00000511426 FBXW7Q969H0 707 aa17.88■□□□□ 0.45
SCLT1-209ENST00000511426 MCM9Q9NXL9 1143 aa17.88■□□□□ 0.45
SCLT1-209ENST00000511426 SERPINA10Q9UK55 444 aa17.88■□□□□ 0.45
SCLT1-209ENST00000511426 DDX11L8A8MPP1 907 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 KDM4AO75164 1064 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 BRD1O95696 1058 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 PDIA3P30101 505 aaKnown RBP17.87■□□□□ 0.45
SCLT1-209ENST00000511426 PTGER2P43116 358 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 C12orf60Q5U649 245 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 IQCA1Q86XH1 822 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 TNPO1Q92973 898 aaKnown RBP17.87■□□□□ 0.45
SCLT1-209ENST00000511426 ZDHHC15Q96MV8 337 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 ZSWIM5Q9P217 1185 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 ZNF219Q9P2Y4 722 aaPredicted RBP17.87■□□□□ 0.45
SCLT1-209ENST00000511426 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.87■□□□□ 0.45
SCLT1-209ENST00000511426 LTBP3Q9NS15 1303 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 NID2Q14112 1375 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 PSME4Q14997 1843 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 NPM3O75607 178 aaKnown RBP17.87■□□□□ 0.45
SCLT1-209ENST00000511426 GJB2P29033 226 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 APOBRQ0VD83 1088 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 PPP2R5BQ15173 497 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 CYB5R4Q7L1T6 521 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 IGDCC4Q8TDY8 1250 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 LARP6Q9BRS8 491 aaKnown RBP17.87■□□□□ 0.45
SCLT1-209ENST00000511426 ANP32EQ9BTT0 268 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 LRRC2Q9BYS8 371 aa17.87■□□□□ 0.45
SCLT1-209ENST00000511426 DDX60LQ5H9U9 1706 aaKnown RBP17.86■□□□□ 0.45
SCLT1-209ENST00000511426 ZNF646O15015 1829 aaPredicted RBP17.86■□□□□ 0.45
SCLT1-209ENST00000511426 SCRN1Q12765 414 aa17.86■□□□□ 0.45
SCLT1-209ENST00000511426 CCDC178Q5BJE1 867 aa17.86■□□□□ 0.45
SCLT1-209ENST00000511426 TMEM67Q5HYA8 995 aa17.86■□□□□ 0.45
SCLT1-209ENST00000511426 LARGE2Q8N3Y3 721 aa17.86■□□□□ 0.45
SCLT1-209ENST00000511426 NECAB1Q8N987 351 aa17.86■□□□□ 0.45
SCLT1-209ENST00000511426 NAV1Q8NEY1 1877 aa17.86■□□□□ 0.45
SCLT1-209ENST00000511426 SMARCC2Q8TAQ2 1214 aa17.86■□□□□ 0.45
SCLT1-209ENST00000511426 UBAC1Q9BSL1 405 aa17.86■□□□□ 0.45
SCLT1-209ENST00000511426 FLT1P17948 1338 aa17.85■□□□□ 0.45
SCLT1-209ENST00000511426 KLF18A0A0U1RQI7 1052 aa17.85■□□□□ 0.45
SCLT1-209ENST00000511426 IFIT3O14879 490 aaKnown RBP17.85■□□□□ 0.45
SCLT1-209ENST00000511426 TGFBRAP1Q8WUH2 860 aa17.85■□□□□ 0.45
SCLT1-209ENST00000511426 TAOK3Q9H2K8 898 aa17.85■□□□□ 0.45
SCLT1-209ENST00000511426 TOMM22Q9NS69 142 aa17.85■□□□□ 0.45
SCLT1-209ENST00000511426 ATP6V1DQ9Y5K8 247 aa17.85■□□□□ 0.45
SCLT1-209ENST00000511426 GOLGA6L22H0YM25 854 aa17.84■□□□□ 0.45
SCLT1-209ENST00000511426 IARSP41252 1262 aaKnown RBP17.84■□□□□ 0.45
SCLT1-209ENST00000511426 CRKP46108 304 aa17.84■□□□□ 0.45
SCLT1-209ENST00000511426 CPLX2Q6PUV4 134 aaKnown RBP17.84■□□□□ 0.45
SCLT1-209ENST00000511426 SYNE3Q6ZMZ3 975 aa17.84■□□□□ 0.45
SCLT1-209ENST00000511426 CHST3Q7LGC8 479 aa17.84■□□□□ 0.45
SCLT1-209ENST00000511426 LY9Q9HBG7 655 aa17.84■□□□□ 0.45
SCLT1-209ENST00000511426 FOCADQ5VW36 1801 aa17.84■□□□□ 0.45
SCLT1-209ENST00000511426 GOLGA8BA8MQT2 603 aa17.83■□□□□ 0.45
SCLT1-209ENST00000511426 STX6O43752 255 aa17.83■□□□□ 0.45
SCLT1-209ENST00000511426 CDKL5O76039 1030 aa17.83■□□□□ 0.45
SCLT1-209ENST00000511426 WTAPQ15007 396 aa17.83■□□□□ 0.45
SCLT1-209ENST00000511426 RRP12Q5JTH9 1297 aaKnown RBP17.83■□□□□ 0.45
SCLT1-209ENST00000511426 APOA5Q6Q788 366 aa17.83■□□□□ 0.45
SCLT1-209ENST00000511426 NIM1KQ8IY84 436 aa17.83■□□□□ 0.45
SCLT1-209ENST00000511426 SPON1Q9HCB6 807 aa17.83■□□□□ 0.45
SCLT1-209ENST00000511426 ZNRF3Q9ULT6 936 aa17.83■□□□□ 0.45
SCLT1-209ENST00000511426 CCDC69A6NI79 296 aa17.83■□□□□ 0.44
SCLT1-209ENST00000511426 POLR3DP05423 398 aaPredicted RBP17.83■□□□□ 0.44
SCLT1-209ENST00000511426 VIL1P09327 827 aaKnown RBP17.83■□□□□ 0.44
SCLT1-209ENST00000511426 SYT1P21579 422 aa17.83■□□□□ 0.44
SCLT1-209ENST00000511426 MCM4P33991 863 aa17.83■□□□□ 0.44
SCLT1-209ENST00000511426 STK3Q13188 491 aa17.83■□□□□ 0.44
SCLT1-209ENST00000511426 TTC6Q86TZ1 520 aa17.83■□□□□ 0.44
SCLT1-209ENST00000511426 BAZ2AQ9UIF9 1905 aaKnown RBP17.82■□□□□ 0.44
SCLT1-209ENST00000511426 FER1L6Q2WGJ9 1857 aa17.82■□□□□ 0.44
SCLT1-209ENST00000511426 CCDC196A0A1B0GTZ2 297 aa17.82■□□□□ 0.44
SCLT1-209ENST00000511426 YDJCA8MPS7 323 aa17.82■□□□□ 0.44
SCLT1-209ENST00000511426 APOBEC3HQ6NTF7 200 aaKnown RBP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms