RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SDR42E1Q8WUS8 393 aa35.56■■■■□ 3.28
LIMCH1-211ENST00000509638 TMEM39BQ9GZU3 492 aa35.56■■■■□ 3.28
LIMCH1-211ENST00000509638 PRKAB2O43741 272 aa35.55■■■■□ 3.28
LIMCH1-211ENST00000509638 DLK2Q6UY11 383 aa35.55■■■■□ 3.28
LIMCH1-211ENST00000509638 PPP2R3BQ9Y5P8 575 aa35.55■■■■□ 3.28
LIMCH1-211ENST00000509638 RPAP1Q9BWH6 1393 aaPredicted RBP35.55■■■■□ 3.28
LIMCH1-211ENST00000509638 ENTPD3O75355 529 aa35.55■■■■□ 3.28
LIMCH1-211ENST00000509638 CDC45O75419 566 aa35.55■■■■□ 3.28
LIMCH1-211ENST00000509638 SLC4A4Q9Y6R1 1079 aa35.55■■■■□ 3.28
LIMCH1-211ENST00000509638 TRPM7Q96QT4 1865 aa35.54■■■■□ 3.28
LIMCH1-211ENST00000509638 TRAF5O00463 557 aa35.54■■■■□ 3.28
LIMCH1-211ENST00000509638 NPM3O75607 178 aaKnown RBP35.54■■■■□ 3.28
LIMCH1-211ENST00000509638 OSBPL5Q9H0X9 879 aaPredicted RBP35.54■■■■□ 3.28
LIMCH1-211ENST00000509638 IL25Q9H293 177 aa35.54■■■■□ 3.28
LIMCH1-211ENST00000509638 CCDC171Q6TFL3 1326 aa35.54■■■■□ 3.28
LIMCH1-211ENST00000509638 COL2A1P02458 1487 aaPredicted RBP35.53■■■■□ 3.28
LIMCH1-211ENST00000509638 ZFPM1Q8IX07 1006 aa35.53■■■■□ 3.28
LIMCH1-211ENST00000509638 FAM151AQ8WW52 585 aa35.53■■■■□ 3.28
LIMCH1-211ENST00000509638 RAD50Q92878 1312 aa35.53■■■■□ 3.28
LIMCH1-211ENST00000509638 PRAMEF18Q5VWM3 479 aa35.52■■■■□ 3.28
LIMCH1-211ENST00000509638 CDAN1Q8IWY9 1227 aa35.52■■■■□ 3.28
LIMCH1-211ENST00000509638 RUFY2Q8WXA3 655 aa35.52■■■■□ 3.28
LIMCH1-211ENST00000509638 LAMB1P07942 1786 aa35.52■■■■□ 3.28
LIMCH1-211ENST00000509638 GNAT2P19087 354 aa35.51■■■■□ 3.28
LIMCH1-211ENST00000509638 SIPA1L1O43166 1804 aa35.51■■■■□ 3.27
LIMCH1-211ENST00000509638 CDCA5Q96FF9 252 aa35.51■■■■□ 3.27
LIMCH1-211ENST00000509638 ATRNL1Q5VV63 1379 aa35.5■■■■□ 3.27
LIMCH1-211ENST00000509638 ITGBL1O95965 494 aaPredicted RBP35.5■■■■□ 3.27
LIMCH1-211ENST00000509638 TEPSINQ96N21 525 aa35.5■■■■□ 3.27
LIMCH1-211ENST00000509638 DCP1AQ9NPI6 582 aaPredicted RBP35.5■■■■□ 3.27
LIMCH1-211ENST00000509638 ATP8A2Q9NTI2 1148 aa35.5■■■■□ 3.27
LIMCH1-211ENST00000509638 SSC5DA1L4H1 1573 aa35.49■■■■□ 3.27
LIMCH1-211ENST00000509638 MFAP1P55081 439 aaKnown RBP35.49■■■■□ 3.27
LIMCH1-211ENST00000509638 CASC1Q6TDU7 716 aa35.49■■■■□ 3.27
LIMCH1-211ENST00000509638 MKRN1Q9UHC7 482 aaKnown RBP35.49■■■■□ 3.27
LIMCH1-211ENST00000509638 SAP30BPQ9UHR5 308 aaKnown RBP35.49■■■■□ 3.27
LIMCH1-211ENST00000509638 FMR1Q06787 632 aaKnown RBP eCLIP35.48■■■■□ 3.27
LIMCH1-211ENST00000509638 FSTL1Q12841 308 aa35.48■■■■□ 3.27
LIMCH1-211ENST00000509638 ZSCAN29Q8IWY8 852 aaPredicted RBP35.48■■■■□ 3.27
LIMCH1-211ENST00000509638 GSG1L2A8MUP6 293 aa35.47■■■■□ 3.27
LIMCH1-211ENST00000509638 VPS53Q5VIR6 699 aa35.47■■■■□ 3.27
LIMCH1-211ENST00000509638 SH3BP5LQ7L8J4 393 aa35.47■■■■□ 3.27
LIMCH1-211ENST00000509638 EPB41L4AQ9HCS5 686 aaPredicted RBP35.47■■■■□ 3.27
LIMCH1-211ENST00000509638 DDTLA6NHG4 134 aaPredicted RBP35.47■■■■□ 3.27
LIMCH1-211ENST00000509638 FOXP2O15409 715 aa35.47■■■■□ 3.27
LIMCH1-211ENST00000509638 SGSM2O43147 1006 aa35.47■■■■□ 3.27
LIMCH1-211ENST00000509638 APPP05067 770 aa35.47■■■■□ 3.27
LIMCH1-211ENST00000509638 DDRGK1Q96HY6 314 aa35.47■■■■□ 3.27
LIMCH1-211ENST00000509638 SLC4A8Q2Y0W8 1093 aa35.46■■■■□ 3.27
LIMCH1-211ENST00000509638 NBPF12Q5TAG4 269 aaPredicted RBP35.46■■■■□ 3.27
LIMCH1-211ENST00000509638 CSRNP1Q96S65 589 aa35.46■■■■□ 3.27
LIMCH1-211ENST00000509638 ESYT1Q9BSJ8 1104 aa35.46■■■■□ 3.27
LIMCH1-211ENST00000509638 PALD1Q9ULE6 856 aa35.46■■■■□ 3.27
LIMCH1-211ENST00000509638 MCM9Q9NXL9 1143 aa35.45■■■■□ 3.27
LIMCH1-211ENST00000509638 PASKQ96RG2 1323 aa35.44■■■■□ 3.26
LIMCH1-211ENST00000509638 ZNF408Q9H9D4 720 aa35.44■■■■□ 3.26
LIMCH1-211ENST00000509638 PATL2C9JE40 543 aaKnown RBP35.43■■■■□ 3.26
LIMCH1-211ENST00000509638 TDO2P48775 406 aa35.43■■■■□ 3.26
LIMCH1-211ENST00000509638 HSPD1P10809 573 aaKnown RBP35.42■■■■□ 3.26
LIMCH1-211ENST00000509638 GIMAP6Q6P9H5 292 aa35.42■■■■□ 3.26
LIMCH1-211ENST00000509638 NACAP1Q9BZK3 213 aa35.42■■■■□ 3.26
LIMCH1-211ENST00000509638 DHX36Q9H2U1 1008 aaKnown RBP35.42■■■■□ 3.26
LIMCH1-211ENST00000509638 LAMA4Q16363 1823 aa35.42■■■■□ 3.26
LIMCH1-211ENST00000509638 SUPT20HL1Q3ZLR7 823 aa35.41■■■■□ 3.26
LIMCH1-211ENST00000509638 IFNL3Q8IZI9 196 aa35.41■■■■□ 3.26
LIMCH1-211ENST00000509638 PAPPA2Q9BXP8 1791 aa35.41■■■■□ 3.26
LIMCH1-211ENST00000509638 NF2P35240 595 aa35.4■■■■□ 3.26
LIMCH1-211ENST00000509638 NAPBQ9H115 298 aa35.4■■■■□ 3.26
LIMCH1-211ENST00000509638 OTOFQ9HC10 1997 aa35.4■■■■□ 3.26
LIMCH1-211ENST00000509638 POLR3DP05423 398 aaPredicted RBP35.39■■■■□ 3.26
LIMCH1-211ENST00000509638 HLA-DOAP06340 250 aa35.39■■■■□ 3.26
LIMCH1-211ENST00000509638 ARPP21Q9UBL0 812 aaPredicted RBP35.39■■■■□ 3.26
LIMCH1-211ENST00000509638 CELF2O95319 508 aaKnown RBP35.38■■■■□ 3.25
LIMCH1-211ENST00000509638 CYP2D6P10635 497 aa35.38■■■■□ 3.25
LIMCH1-211ENST00000509638 MYH8P13535 1937 aa35.38■■■■□ 3.25
LIMCH1-211ENST00000509638 USP17L12C9JPN9 530 aa35.38■■■■□ 3.25
LIMCH1-211ENST00000509638 USP17L21D6R901 530 aa35.38■■■■□ 3.25
LIMCH1-211ENST00000509638 EVX2Q03828 476 aa35.38■■■■□ 3.25
LIMCH1-211ENST00000509638 AMOTL1Q8IY63 956 aa35.38■■■■□ 3.25
LIMCH1-211ENST00000509638 HOOK2Q96ED9 719 aa35.38■■■■□ 3.25
LIMCH1-211ENST00000509638 CYP2D7A0A087X1C5 515 aa35.37■■■■□ 3.25
LIMCH1-211ENST00000509638 CTR9Q6PD62 1173 aa35.37■■■■□ 3.25
LIMCH1-211ENST00000509638 DSCC1Q9BVC3 393 aa35.37■■■■□ 3.25
LIMCH1-211ENST00000509638 PI4KBQ9UBF8 816 aa35.37■■■■□ 3.25
LIMCH1-211ENST00000509638 ZMYM6O95789 1325 aa35.37■■■■□ 3.25
LIMCH1-211ENST00000509638 TTC6Q86TZ1 520 aa35.36■■■■□ 3.25
LIMCH1-211ENST00000509638 PLCD1P51178 756 aa35.35■■■■□ 3.25
LIMCH1-211ENST00000509638 FZD1Q9UP38 647 aa35.35■■■■□ 3.25
LIMCH1-211ENST00000509638 SLURP2P0DP57 97 aa35.34■■■■□ 3.25
LIMCH1-211ENST00000509638 PRKG1Q13976 671 aa35.34■■■■□ 3.25
LIMCH1-211ENST00000509638 MIGA2Q7L4E1 593 aa35.34■■■■□ 3.25
LIMCH1-211ENST00000509638 FGAP02671 866 aa35.34■■■■□ 3.25
LIMCH1-211ENST00000509638 ALX1Q15699 326 aa35.34■■■■□ 3.25
LIMCH1-211ENST00000509638 C12orf60Q5U649 245 aa35.34■■■■□ 3.25
LIMCH1-211ENST00000509638 CST9Q5W186 159 aa35.34■■■■□ 3.25
LIMCH1-211ENST00000509638 DCAF15Q66K64 600 aa35.34■■■■□ 3.25
LIMCH1-211ENST00000509638 ANO2Q9NQ90 1003 aa35.34■■■■□ 3.25
LIMCH1-211ENST00000509638 FAM196BA6NMK8 535 aa35.33■■■■□ 3.25
LIMCH1-211ENST00000509638 PTH1RQ03431 593 aa35.33■■■■□ 3.25
LIMCH1-211ENST00000509638 SBK1Q52WX2 424 aa35.33■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms