RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 RAB11FIP3O75154 756 aa3.44□□□□□ -1.86
NEDD4-208ENST00000508342 CRKP46108 304 aa3.44□□□□□ -1.86
NEDD4-208ENST00000508342 CCL15Q16663 113 aa3.44□□□□□ -1.86
NEDD4-208ENST00000508342 LMBR1LQ6UX01 489 aa3.44□□□□□ -1.86
NEDD4-208ENST00000508342 CALR3Q96L12 384 aaKnown RBP3.44□□□□□ -1.86
NEDD4-208ENST00000508342 CSRNP1Q96S65 589 aa3.44□□□□□ -1.86
NEDD4-208ENST00000508342 BICDL2A1A5D9 508 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 TNPO2O14787 897 aaKnown RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 HLFQ16534 295 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 CCDC155Q8N6L0 562 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 MIGA1Q8NAN2 632 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 TTC16Q8NEE8 873 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 AKT1S1Q96B36 256 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 CAPNS2Q96L46 248 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 UIMC1Q96RL1 719 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 MCM9Q9NXL9 1143 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 TNRC6CQ9HCJ0 1690 aaKnown RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 POLA2Q14181 598 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 IMMTQ16891 758 aaKnown RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 HSP90B2PQ58FF3 399 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 CRAMP1Q96RY5 1269 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 CCDC8Q9H0W5 538 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 BCL9LQ86UU0 1499 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 UBE2Q2LH0YL09 131 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 CYP27B1O15528 508 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 SORBS3O60504 671 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 AOC2O75106 756 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 PDE4DQ08499 809 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 AAMPQ13685 434 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 CERS3Q8IU89 383 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 CARD14Q9BXL6 1004 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 POLRMTO00411 1230 aaKnown RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 BTDP43251 543 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 ANAPC15P60006 121 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 OPTNQ96CV9 577 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 GLIS2Q9BZE0 524 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 DDX21Q9NR30 783 aaKnown RBP eCLIP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 AKAP11Q9UKA4 1901 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 TNS1Q9HBL0 1735 aaKnown RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 GOLIM4O00461 696 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 MAP3K11Q16584 847 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 ARHGEF16Q5VV41 709 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 INTS5Q6P9B9 1019 aaKnown RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 USP17L2Q6R6M4 530 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 SAMD7Q7Z3H4 446 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 TTC6Q86TZ1 520 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 KLRG1Q96E93 195 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 BIRC2Q13490 618 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 FAM177A1Q8N128 213 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 GPATCH11Q8N954 259 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 GAS2L1Q99501 681 aaPredicted RBP3.43□□□□□ -1.86
NEDD4-208ENST00000508342 NMRK2Q9NPI5 230 aa3.43□□□□□ -1.86
NEDD4-208ENST00000508342 GLTPD2A6NH11 291 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 ADM5C9JUS6 153 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 CALML3P27482 149 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 EIF4A1P60842 406 aaKnown RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 TAF12Q16514 161 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 CCAR2Q8N163 923 aaKnown RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 SNRKQ9NRH2 765 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 CHMP5Q9NZZ3 219 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 SOS1Q07889 1333 aaPredicted RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 C4AP0C0L4 1744 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 TRAF5O00463 557 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 CA12O43570 354 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 MYCLP12524 364 aaPredicted RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 TFCP2Q12800 502 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 CERKLQ49MI3 558 aaPredicted RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 CCDC178Q5BJE1 867 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 PHAXQ9H814 394 aaKnown RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 BMP2KQ9NSY1 1161 aaPredicted RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 BABAM1Q9NWV8 329 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 KDRP35968 1356 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 LAMB4A4D0S4 1761 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 ABCC4O15439 1325 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 UQCRHP07919 91 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 GYG1P46976 350 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 KIF23Q02241 960 aaPredicted RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 SLC20A2Q08357 652 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 HLTFQ14527 1009 aaKnown RBP eCLIP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 PRAMEF18Q5VWM3 479 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 RELTQ969Z4 430 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 BOLA2Q9H3K6 86 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 EFCC1Q9HA90 598 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 FANCIQ9NVI1 1328 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 SCN11AQ9UI33 1791 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 ATP6V0A2Q9Y487 856 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 USP31Q70CQ4 1352 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 ATP2B1P20020 1258 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 NOGQ13253 232 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 PKN2Q16513 984 aaKnown RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 IQCA1Q86XH1 822 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 VPS33BQ9H267 617 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 MTIF3Q9H2K0 278 aaKnown RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 SEC31BQ9NQW1 1179 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 CREBZFQ9NS37 354 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 DDX60Q8IY21 1712 aaKnown RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 KIF28PB7ZC32 967 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 IL15P40933 162 aaPredicted RBP3.42□□□□□ -1.86
NEDD4-208ENST00000508342 KCTD2Q14681 263 aa3.42□□□□□ -1.86
NEDD4-208ENST00000508342 CATIPQ7Z7H3 387 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms