RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 AATFQ9NY61 560 aaKnown RBP eCLIP17.41■□□□□ 0.38
HOXC9-202ENST00000504557 SNCAIPQ9Y6H5 919 aa17.41■□□□□ 0.38
HOXC9-202ENST00000504557 FOCADQ5VW36 1801 aa17.4■□□□□ 0.38
HOXC9-202ENST00000504557 DDTLA6NHG4 134 aaPredicted RBP17.4■□□□□ 0.38
HOXC9-202ENST00000504557 UNCXA6NJT0 531 aa17.4■□□□□ 0.38
HOXC9-202ENST00000504557 IGF2BP3O00425 579 aaKnown RBP eCLIP17.4■□□□□ 0.38
HOXC9-202ENST00000504557 RRP1P56182 461 aaKnown RBP17.4■□□□□ 0.38
HOXC9-202ENST00000504557 IFNL1Q8IU54 200 aa17.4■□□□□ 0.38
HOXC9-202ENST00000504557 TEX11Q8IYF3 940 aa17.4■□□□□ 0.38
HOXC9-202ENST00000504557 SH3RF3Q8TEJ3 882 aaPredicted RBP17.4■□□□□ 0.38
HOXC9-202ENST00000504557 IDI2Q9BXS1 227 aa17.4■□□□□ 0.38
HOXC9-202ENST00000504557 ANTXR1Q9H6X2 564 aa17.4■□□□□ 0.38
HOXC9-202ENST00000504557 MYH1P12882 1939 aa17.39■□□□□ 0.37
HOXC9-202ENST00000504557 SMARCA5O60264 1052 aaPredicted RBP17.39■□□□□ 0.37
HOXC9-202ENST00000504557 ENTPD3O75355 529 aa17.39■□□□□ 0.37
HOXC9-202ENST00000504557 RHBDL3P58872 404 aa17.39■□□□□ 0.37
HOXC9-202ENST00000504557 SH3BP5LQ7L8J4 393 aa17.39■□□□□ 0.37
HOXC9-202ENST00000504557 ADGRA1Q86SQ6 560 aa17.39■□□□□ 0.37
HOXC9-202ENST00000504557 ZNF512BQ96KM6 892 aaPredicted RBP17.39■□□□□ 0.37
HOXC9-202ENST00000504557 DNAJC2Q99543 621 aaKnown RBP17.39■□□□□ 0.37
HOXC9-202ENST00000504557 R3HDMLQ9H3Y0 253 aa17.39■□□□□ 0.37
HOXC9-202ENST00000504557 ATAD5Q96QE3 1844 aa17.39■□□□□ 0.37
HOXC9-202ENST00000504557 RFX7Q2KHR2 1363 aa17.39■□□□□ 0.37
HOXC9-202ENST00000504557 DOCK1Q14185 1865 aa17.38■□□□□ 0.37
HOXC9-202ENST00000504557 CCL15-CCL14A0A0B4J2E2 113 aa17.38■□□□□ 0.37
HOXC9-202ENST00000504557 FAM196BA6NMK8 535 aa17.38■□□□□ 0.37
HOXC9-202ENST00000504557 RAB11FIP3O75154 756 aa17.38■□□□□ 0.37
HOXC9-202ENST00000504557 CYP7A1P22680 504 aa17.38■□□□□ 0.37
HOXC9-202ENST00000504557 CCL15Q16663 113 aa17.38■□□□□ 0.37
HOXC9-202ENST00000504557 ABHD8Q96I13 439 aa17.38■□□□□ 0.37
HOXC9-202ENST00000504557 MCOLN1Q9GZU1 580 aa17.38■□□□□ 0.37
HOXC9-202ENST00000504557 BAG3O95817 575 aa17.37■□□□□ 0.37
HOXC9-202ENST00000504557 INHBEP58166 350 aa17.37■□□□□ 0.37
HOXC9-202ENST00000504557 SLC4A8Q2Y0W8 1093 aa17.37■□□□□ 0.37
HOXC9-202ENST00000504557 MAGEB6Q8N7X4 407 aa17.37■□□□□ 0.37
HOXC9-202ENST00000504557 MIGA1Q8NAN2 632 aa17.37■□□□□ 0.37
HOXC9-202ENST00000504557 ZNF296Q8WUU4 475 aaPredicted RBP17.37■□□□□ 0.37
HOXC9-202ENST00000504557 MYH7P12883 1935 aa17.37■□□□□ 0.37
HOXC9-202ENST00000504557 SPDYE5A6NIY4 337 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 GPR25O00155 361 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 ALDH1A1P00352 501 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 GTF2A2P52657 109 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 DYNLL1P63167 89 aaKnown RBP17.36■□□□□ 0.37
HOXC9-202ENST00000504557 OTUD7BQ6GQQ9 843 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 ERO1BQ86YB8 467 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 MAPKAPK5Q8IW41 473 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 TGFBRAP1Q8WUH2 860 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 BRI3BPQ8WY22 251 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 CRBNQ96SW2 442 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 PTPN18Q99952 460 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 LRRCC1Q9C099 1032 aa17.36■□□□□ 0.37
HOXC9-202ENST00000504557 CCDC85CA6NKD9 419 aa17.35■□□□□ 0.37
HOXC9-202ENST00000504557 GOLIM4O00461 696 aa17.35■□□□□ 0.37
HOXC9-202ENST00000504557 IRF6O14896 467 aa17.35■□□□□ 0.37
HOXC9-202ENST00000504557 MAP3K12Q12852 859 aa17.35■□□□□ 0.37
HOXC9-202ENST00000504557 EDC3Q96F86 508 aaKnown RBP17.35■□□□□ 0.37
HOXC9-202ENST00000504557 MS4A4AQ96JQ5 239 aa17.35■□□□□ 0.37
HOXC9-202ENST00000504557 OSBPL5Q9H0X9 879 aaPredicted RBP17.35■□□□□ 0.37
HOXC9-202ENST00000504557 BOLA2Q9H3K6 86 aa17.35■□□□□ 0.37
HOXC9-202ENST00000504557 SAP30BPQ9UHR5 308 aaKnown RBP17.35■□□□□ 0.37
HOXC9-202ENST00000504557 SIPA1L1O43166 1804 aa17.34■□□□□ 0.37
HOXC9-202ENST00000504557 CRHR2Q13324 411 aa17.34■□□□□ 0.37
HOXC9-202ENST00000504557 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.34■□□□□ 0.37
HOXC9-202ENST00000504557 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.34■□□□□ 0.37
HOXC9-202ENST00000504557 PHIPQ8WWQ0 1821 aa17.33■□□□□ 0.37
HOXC9-202ENST00000504557 ATRNL1Q5VV63 1379 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 FKTNO75072 461 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 PLCG2P16885 1265 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 PPIL2Q13356 520 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 SNAPC2Q13487 334 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 TAF1CQ15572 869 aaPredicted RBP17.33■□□□□ 0.36
HOXC9-202ENST00000504557 CCDC84Q86UT8 332 aaPredicted RBP17.33■□□□□ 0.36
HOXC9-202ENST00000504557 FAM43AQ8N2R8 423 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 PICK1Q9NRD5 415 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 ZNF112Q9UJU3 913 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 PCDHB15Q9Y5E8 787 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 PTPRFP10586 1907 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 NAV1Q8NEY1 1877 aa17.33■□□□□ 0.36
HOXC9-202ENST00000504557 ECM2O94769 699 aaPredicted RBP17.32■□□□□ 0.36
HOXC9-202ENST00000504557 CETPP11597 493 aa17.32■□□□□ 0.36
HOXC9-202ENST00000504557 USP5P45974 858 aa17.32■□□□□ 0.36
HOXC9-202ENST00000504557 PPATQ06203 517 aa17.32■□□□□ 0.36
HOXC9-202ENST00000504557 TTF1Q15361 905 aaPredicted RBP17.32■□□□□ 0.36
HOXC9-202ENST00000504557 CTU1Q7Z7A3 348 aaKnown RBP17.32■□□□□ 0.36
HOXC9-202ENST00000504557 SCYL3Q8IZE3 742 aa17.32■□□□□ 0.36
HOXC9-202ENST00000504557 FLT1P17948 1338 aa17.31■□□□□ 0.36
HOXC9-202ENST00000504557 TESPA1A2RU30 521 aaPredicted RBP17.31■□□□□ 0.36
HOXC9-202ENST00000504557 PHF20L1A8MW92 1017 aa17.31■□□□□ 0.36
HOXC9-202ENST00000504557 MAP4K4O95819 1239 aaPredicted RBP17.31■□□□□ 0.36
HOXC9-202ENST00000504557 SLC9C2Q5TAH2 1124 aa17.31■□□□□ 0.36
HOXC9-202ENST00000504557 TRIM34Q9BYJ4 488 aa17.31■□□□□ 0.36
HOXC9-202ENST00000504557 PALD1Q9ULE6 856 aa17.31■□□□□ 0.36
HOXC9-202ENST00000504557 ZHX2Q9Y6X8 837 aa17.31■□□□□ 0.36
HOXC9-202ENST00000504557 BAZ2AQ9UIF9 1905 aaKnown RBP17.3■□□□□ 0.36
HOXC9-202ENST00000504557 BTBD19C9JJ37 291 aa17.3■□□□□ 0.36
HOXC9-202ENST00000504557 PPP4CP60510 307 aa17.3■□□□□ 0.36
HOXC9-202ENST00000504557 NOL9Q5SY16 702 aaKnown RBP17.3■□□□□ 0.36
HOXC9-202ENST00000504557 TSHZ3Q63HK5 1081 aa17.3■□□□□ 0.36
HOXC9-202ENST00000504557 CRACR2BQ8N4Y2 399 aaPredicted RBP17.3■□□□□ 0.36
HOXC9-202ENST00000504557 DCTPP1Q9H773 170 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms