RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PPP2R5BQ15173 497 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 ZRSR1Q15695 479 aaKnown RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 CAVIN4Q5BKX8 364 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 RC3H1Q5TC82 1133 aaKnown RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 CYB5R4Q7L1T6 521 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 ENGASEQ8NFI3 743 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 IGDCC4Q8TDY8 1250 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 ALG1Q9BT22 464 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 LY9Q9HBG7 655 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 EPB41L4AQ9HCS5 686 aaPredicted RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 BSDC1Q9NW68 430 aaPredicted RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 ATF5Q9Y2D1 282 aaPredicted RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 SLC4A4Q9Y6R1 1079 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 GSG1L2A8MUP6 293 aa13.9□□□□□ -0.18
NUP54-202ENST00000502850 IFIT3O14879 490 aaKnown RBP13.9□□□□□ -0.18
NUP54-202ENST00000502850 CDC25BP30305 580 aa13.9□□□□□ -0.18
NUP54-202ENST00000502850 SNW1Q13573 536 aaKnown RBP13.9□□□□□ -0.18
NUP54-202ENST00000502850 SLC10A5Q5PT55 438 aa13.9□□□□□ -0.18
NUP54-202ENST00000502850 CEP57L1Q8IYX8 460 aa13.9□□□□□ -0.18
NUP54-202ENST00000502850 ARMT1Q9H993 441 aa13.9□□□□□ -0.18
NUP54-202ENST00000502850 DENND2AQ9ULE3 1009 aa13.9□□□□□ -0.18
NUP54-202ENST00000502850 LY75O60449 1722 aa13.9□□□□□ -0.18
NUP54-202ENST00000502850 ZBTB22O15209 634 aa13.9□□□□□ -0.19
NUP54-202ENST00000502850 BCAMP50895 628 aa13.9□□□□□ -0.19
NUP54-202ENST00000502850 ANO1Q5XXA6 986 aa13.9□□□□□ -0.19
NUP54-202ENST00000502850 SARM1Q6SZW1 724 aa13.9□□□□□ -0.19
NUP54-202ENST00000502850 LUZP1Q86V48 1076 aa13.9□□□□□ -0.19
NUP54-202ENST00000502850 MICU3Q86XE3 530 aa13.9□□□□□ -0.19
NUP54-202ENST00000502850 TRIM22Q8IYM9 498 aa13.9□□□□□ -0.19
NUP54-202ENST00000502850 PCDHA7Q9UN72 937 aa13.9□□□□□ -0.19
NUP54-202ENST00000502850 KIAA1551Q9HCM1 1747 aa13.89□□□□□ -0.19
NUP54-202ENST00000502850 GTF2E1P29083 439 aaPredicted RBP13.89□□□□□ -0.19
NUP54-202ENST00000502850 SSRP1Q08945 709 aaKnown RBP13.89□□□□□ -0.19
NUP54-202ENST00000502850 WTAPQ15007 396 aa13.89□□□□□ -0.19
NUP54-202ENST00000502850 SAFBQ15424 915 aaKnown RBP eCLIP13.89□□□□□ -0.19
NUP54-202ENST00000502850 ZNF827Q17R98 1081 aa13.89□□□□□ -0.19
NUP54-202ENST00000502850 FMR1NBQ8N0W7 255 aaPredicted RBP13.89□□□□□ -0.19
NUP54-202ENST00000502850 ANKRD2Q9GZV1 360 aa13.89□□□□□ -0.19
NUP54-202ENST00000502850 MTFR1LQ9H019 292 aa13.89□□□□□ -0.19
NUP54-202ENST00000502850 DNAJC25Q9H1X3 360 aa13.89□□□□□ -0.19
NUP54-202ENST00000502850 GOLPH3LQ9H4A5 285 aa13.89□□□□□ -0.19
NUP54-202ENST00000502850 ANAPC4Q9UJX5 808 aa13.89□□□□□ -0.19
NUP54-202ENST00000502850 LAMB1P07942 1786 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 MAGEB6P1A0A0J9YX57 407 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 BECN2A8MW95 431 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 PPP6R2O75170 966 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 FMNL1O95466 1100 aaPredicted RBP13.88□□□□□ -0.19
NUP54-202ENST00000502850 IFNAR1P17181 557 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 CYP7A1P22680 504 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 PTGER2P43116 358 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 NT5C2P49902 561 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 KCNQ4P56696 695 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 PLA2G4DQ86XP0 818 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 VPS37DQ86XT2 251 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 LCORLQ8N3X6 602 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 LINC00116Q8NCU8 138 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 AKT1S1Q96B36 256 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 SDF4Q9BRK5 362 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 TRIM5Q9C035 493 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 FTOQ9C0B1 505 aaKnown RBP eCLIP13.88□□□□□ -0.19
NUP54-202ENST00000502850 CACNA1SQ13698 1873 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 DLEC1Q9Y238 1755 aa13.88□□□□□ -0.19
NUP54-202ENST00000502850 CMA1P23946 247 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 ZNF75DP51815 510 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 SLC39A14Q15043 492 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 RTN1Q16799 776 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 CCDC88AQ3V6T2 1871 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 ERFEQ4G0M1 354 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 KRT40Q6A162 431 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 ESR2Q92731 530 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 TIGD1Q96MW7 591 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 BPIFA3Q9BQP9 254 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 UBAC1Q9BSL1 405 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 SPTLC3Q9NUV7 552 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 RAI14Q9P0K7 980 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 ZSWIM5Q9P217 1185 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 NARFQ9UHQ1 456 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 QSER1Q2KHR3 1735 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 DUOX1Q9NRD9 1551 aa13.87□□□□□ -0.19
NUP54-202ENST00000502850 POLR3DP05423 398 aaPredicted RBP13.86□□□□□ -0.19
NUP54-202ENST00000502850 U2AF2P26368 475 aaKnown RBP eCLIP13.86□□□□□ -0.195e-7■□□□□ 8.9
NUP54-202ENST00000502850 TPM4P67936 248 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 PPARAQ07869 468 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 DHX8Q14562 1220 aaKnown RBP13.86□□□□□ -0.19
NUP54-202ENST00000502850 NOLC1Q14978 699 aaKnown RBP eCLIP13.86□□□□□ -0.19
NUP54-202ENST00000502850 NTRK3Q16288 839 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 DRC7Q8IY82 874 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 NOL10Q9BSC4 688 aaKnown RBP13.86□□□□□ -0.19
NUP54-202ENST00000502850 BRIP1Q9BX63 1249 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 CLIC4Q9Y696 253 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 NEMFO60524 1076 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 RPS6KA4O75676 772 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 DEXIO95424 95 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 CTDSPL2Q05D32 466 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 IQCB1Q15051 598 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 OTUD7BQ6GQQ9 843 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 RAB11FIP4Q86YS3 637 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 MRFAP1L1Q96HT8 127 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 PRIMPOLQ96LW4 560 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms