RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 EXOSC9Q06265 439 aaKnown RBP20.76■□□□□ 0.91
VIM-208ENST00000497849 ZFPM1Q8IX07 1006 aa20.76■□□□□ 0.91
VIM-208ENST00000497849 ZHX2Q9Y6X8 837 aa20.76■□□□□ 0.91
VIM-208ENST00000497849 DOCK2Q92608 1830 aa20.76■□□□□ 0.91
VIM-208ENST00000497849 DIXDC1Q155Q3 683 aa20.75■□□□□ 0.91
VIM-208ENST00000497849 RABL6Q3YEC7 729 aaPredicted RBP20.75■□□□□ 0.91
VIM-208ENST00000497849 SCYL3Q8IZE3 742 aa20.75■□□□□ 0.91
VIM-208ENST00000497849 COL25A1Q9BXS0 654 aaPredicted RBP20.75■□□□□ 0.91
VIM-208ENST00000497849 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.75■□□□□ 0.91
VIM-208ENST00000497849 SLC45A1Q9Y2W3 748 aa20.75■□□□□ 0.91
VIM-208ENST00000497849 AFG3L2Q9Y4W6 797 aa20.75■□□□□ 0.91
VIM-208ENST00000497849 ZNF316A6NFI3 1004 aaPredicted RBP20.74■□□□□ 0.91
VIM-208ENST00000497849 PTPRAP18433 802 aa20.74■□□□□ 0.91
VIM-208ENST00000497849 FGFR2P21802 821 aa20.74■□□□□ 0.91
VIM-208ENST00000497849 GADL1Q6ZQY3 521 aa20.74■□□□□ 0.91
VIM-208ENST00000497849 SRCIN1Q9C0H9 1055 aa20.74■□□□□ 0.91
VIM-208ENST00000497849 BICC1Q9H694 974 aaKnown RBP20.74■□□□□ 0.91
VIM-208ENST00000497849 TAOK2Q9UL54 1235 aa20.74■□□□□ 0.91
VIM-208ENST00000497849 KIF16BQ96L93 1317 aa20.74■□□□□ 0.91
VIM-208ENST00000497849 DDX60LQ5H9U9 1706 aaKnown RBP20.73■□□□□ 0.91
VIM-208ENST00000497849 SYN1P17600 705 aa20.73■□□□□ 0.91
VIM-208ENST00000497849 SLC4A10Q6U841 1118 aa20.73■□□□□ 0.91
VIM-208ENST00000497849 ANKRD44Q8N8A2 993 aa20.73■□□□□ 0.91
VIM-208ENST00000497849 ANKLE1Q8NAG6 615 aa20.73■□□□□ 0.91
VIM-208ENST00000497849 KLHDC4Q8TBB5 520 aa20.73■□□□□ 0.91
VIM-208ENST00000497849 VCANP13611 3396 aa20.73■□□□□ 0.91
VIM-208ENST00000497849 UTYO14607 1347 aa20.73■□□□□ 0.91
VIM-208ENST00000497849 MAGEA10P43363 369 aaPredicted RBP20.72■□□□□ 0.91
VIM-208ENST00000497849 TDHQ8IZJ6 230 aa20.72■□□□□ 0.91
VIM-208ENST00000497849 WDR66Q8TBY9 1149 aa20.72■□□□□ 0.91
VIM-208ENST00000497849 SMCR8Q8TEV9 937 aaPredicted RBP20.72■□□□□ 0.91
VIM-208ENST00000497849 DOCK1Q14185 1865 aa20.71■□□□□ 0.91
VIM-208ENST00000497849 SLURP2P0DP57 97 aa20.71■□□□□ 0.91
VIM-208ENST00000497849 PRDX5P30044 214 aa20.71■□□□□ 0.91
VIM-208ENST00000497849 CCDC184Q52MB2 194 aa20.71■□□□□ 0.91
VIM-208ENST00000497849 ANKRD13CQ8N6S4 541 aa20.71■□□□□ 0.91
VIM-208ENST00000497849 COA7Q96BR5 231 aa20.71■□□□□ 0.91
VIM-208ENST00000497849 PICK1Q9NRD5 415 aa20.71■□□□□ 0.91
VIM-208ENST00000497849 USP40Q9NVE5 1235 aa20.71■□□□□ 0.91
VIM-208ENST00000497849 PUM3Q15397 648 aaKnown RBP20.7■□□□□ 0.9
VIM-208ENST00000497849 NCBP3Q53F19 620 aaKnown RBP20.7■□□□□ 0.9
VIM-208ENST00000497849 NBPF3Q9H094 633 aa20.7■□□□□ 0.9
VIM-208ENST00000497849 IFIT1P09914 478 aaKnown RBP20.69■□□□□ 0.9
VIM-208ENST00000497849 MAP3K10Q02779 954 aa20.69■□□□□ 0.9
VIM-208ENST00000497849 TRIM32Q13049 653 aa20.69■□□□□ 0.9
VIM-208ENST00000497849 SH3BP5LQ7L8J4 393 aa20.69■□□□□ 0.9
VIM-208ENST00000497849 SPINK5Q9NQ38 1064 aaPredicted RBP20.69■□□□□ 0.9
VIM-208ENST00000497849 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.69■□□□□ 0.9
VIM-208ENST00000497849 HMGCRP04035 888 aa20.68■□□□□ 0.9
VIM-208ENST00000497849 RGS3P49796 1198 aa20.68■□□□□ 0.9
VIM-208ENST00000497849 FAM110CQ1W6H9 321 aa20.68■□□□□ 0.9
VIM-208ENST00000497849 C11orf49Q9H6J7 331 aa20.68■□□□□ 0.9
VIM-208ENST00000497849 AGTPBP1Q9UPW5 1226 aa20.68■□□□□ 0.9
VIM-208ENST00000497849 PLXNB2O15031 1838 aa20.68■□□□□ 0.9
VIM-208ENST00000497849 RPTORQ8N122 1335 aa20.68■□□□□ 0.9
VIM-208ENST00000497849 LAMA2P24043 3122 aaKnown RBP20.68■□□□□ 0.9
VIM-208ENST00000497849 MYH2Q9UKX2 1941 aa20.67■□□□□ 0.9
VIM-208ENST00000497849 TRIM75PA6NK02 468 aa20.67■□□□□ 0.9
VIM-208ENST00000497849 TREML2Q5T2D2 321 aa20.67■□□□□ 0.9
VIM-208ENST00000497849 CCDC84Q86UT8 332 aaPredicted RBP20.67■□□□□ 0.9
VIM-208ENST00000497849 IDI2Q9BXS1 227 aa20.67■□□□□ 0.9
VIM-208ENST00000497849 UBE2OQ9C0C9 1292 aaKnown RBP20.67■□□□□ 0.9
VIM-208ENST00000497849 GJD2Q9UKL4 321 aa20.67■□□□□ 0.9
VIM-208ENST00000497849 RFX7Q2KHR2 1363 aa20.67■□□□□ 0.9
VIM-208ENST00000497849 ENTPD3O75355 529 aa20.66■□□□□ 0.9
VIM-208ENST00000497849 WDR63Q8IWG1 891 aa20.66■□□□□ 0.9
VIM-208ENST00000497849 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.66■□□□□ 0.9
VIM-208ENST00000497849 HMX1Q9NP08 348 aaPredicted RBP20.66■□□□□ 0.9
VIM-208ENST00000497849 OGDHLQ9ULD0 1010 aa20.66■□□□□ 0.9
VIM-208ENST00000497849 LRRFIP2Q9Y608 721 aaKnown RBP20.66■□□□□ 0.9
VIM-208ENST00000497849 PFASO15067 1338 aa20.65■□□□□ 0.9
VIM-208ENST00000497849 DDTLA6NHG4 134 aaPredicted RBP20.65■□□□□ 0.9
VIM-208ENST00000497849 CTNND1O60716 968 aaKnown RBP20.65■□□□□ 0.9
VIM-208ENST00000497849 LDHBP07195 334 aaKnown RBP20.65■□□□□ 0.9
VIM-208ENST00000497849 LPIN2Q92539 896 aa20.65■□□□□ 0.9
VIM-208ENST00000497849 SPTBN5Q9NRC6 3674 aaKnown RBP20.65■□□□□ 0.9
VIM-208ENST00000497849 EYSQ5T1H1 3165 aa20.65■□□□□ 0.9
VIM-208ENST00000497849 LOC285556D6RIA3 1793 aa20.64■□□□□ 0.9
VIM-208ENST00000497849 SLC5A1P13866 664 aa20.64■□□□□ 0.89
VIM-208ENST00000497849 SALL1Q9NSC2 1324 aa20.63■□□□□ 0.89
VIM-208ENST00000497849 GUCD1Q96NT3 240 aa20.63■□□□□ 0.89
VIM-208ENST00000497849 PNMA3Q9UL41 463 aa20.63■□□□□ 0.89
VIM-208ENST00000497849 SALL2Q9Y467 1007 aaPredicted RBP20.63■□□□□ 0.89
VIM-208ENST00000497849 EYA2O00167 538 aa20.62■□□□□ 0.89
VIM-208ENST00000497849 RFX5P48382 616 aaPredicted RBP20.62■□□□□ 0.89
VIM-208ENST00000497849 ZSCAN29Q8IWY8 852 aaPredicted RBP20.62■□□□□ 0.89
VIM-208ENST00000497849 TRIB2Q92519 343 aa20.62■□□□□ 0.89
VIM-208ENST00000497849 DDX4Q9NQI0 724 aaKnown RBP20.62■□□□□ 0.89
VIM-208ENST00000497849 GAKO14976 1311 aa20.61■□□□□ 0.89
VIM-208ENST00000497849 POTEB2H3BUK9 544 aa20.61■□□□□ 0.89
VIM-208ENST00000497849 GCLCP48506 637 aaPredicted RBP20.61■□□□□ 0.89
VIM-208ENST00000497849 MAP3K21Q5TCX8 1036 aa20.61■□□□□ 0.89
VIM-208ENST00000497849 PROCA1Q8NCQ7 364 aaPredicted RBP20.61■□□□□ 0.89
VIM-208ENST00000497849 COL2A1P02458 1487 aaPredicted RBP20.61■□□□□ 0.89
VIM-208ENST00000497849 COL6A1P12109 1028 aa20.6■□□□□ 0.89
VIM-208ENST00000497849 ATG9AQ7Z3C6 839 aa20.6■□□□□ 0.89
VIM-208ENST00000497849 ATAD5Q96QE3 1844 aa20.6■□□□□ 0.89
VIM-208ENST00000497849 FAM109BQ6ICB4 259 aaPredicted RBP20.59■□□□□ 0.89
VIM-208ENST00000497849 DNAH12Q6ZR08 3092 aa20.59■□□□□ 0.89
VIM-208ENST00000497849 PRKAR2AP13861 404 aaKnown RBP20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms