RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 RPAINQ86UA6 219 aa14.85□□□□□ -0.03
GAPVD1-220ENST00000497580 SLC24A3Q9HC58 644 aa14.85□□□□□ -0.03
GAPVD1-220ENST00000497580 HDAC6Q9UBN7 1215 aa14.85□□□□□ -0.03
GAPVD1-220ENST00000497580 ZNF330Q9Y3S2 320 aaPredicted RBP14.85□□□□□ -0.03
GAPVD1-220ENST00000497580 GOLIM4O00461 696 aa14.85□□□□□ -0.03
GAPVD1-220ENST00000497580 A1BGP04217 495 aa14.85□□□□□ -0.03
GAPVD1-220ENST00000497580 SLF1Q9BQI6 1058 aa14.85□□□□□ -0.03
GAPVD1-220ENST00000497580 POLR3EQ9NVU0 708 aa14.85□□□□□ -0.03
GAPVD1-220ENST00000497580 ZEB2O60315 1214 aa14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 SSBP05455 408 aaKnown RBP eCLIP14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 PIP4K2BP78356 416 aa14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 METTL16Q86W50 562 aaKnown RBP14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 FOXP4Q8IVH2 680 aaPredicted RBP14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 CNPY4Q8N129 248 aa14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 PES1O00541 588 aaKnown RBP14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 CPP00450 1065 aa14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 SHC4Q6S5L8 630 aa14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 E7EWF7 191 aa14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 HMGB1P09429 215 aaKnown RBP14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 CEP57Q86XR8 500 aa14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 DBNDD2Q9BQY9 259 aa14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 TEX13AQ9BXU3 409 aaPredicted RBP14.84□□□□□ -0.03
GAPVD1-220ENST00000497580 OTUD6BQ8N6M0 293 aa14.83□□□□□ -0.03
GAPVD1-220ENST00000497580 TRIM10Q9UDY6 481 aa14.83□□□□□ -0.03
GAPVD1-220ENST00000497580 DBNLQ9UJU6 430 aaKnown RBP14.83□□□□□ -0.03
GAPVD1-220ENST00000497580 BTBD11A6QL63 1104 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 NDUFAB1O14561 156 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 CASP14P31944 242 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 CCT6AP40227 531 aaKnown RBP14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 IRAK1P51617 712 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 GSCP56915 257 aaPredicted RBP14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 HPCAL4Q9UM19 191 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 MYO6Q9UM54 1294 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 BMP6P22004 513 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 USPL1Q5W0Q7 1092 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 CTCFLQ8NI51 663 aaPredicted RBP14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 CAPS2Q9BXY5 557 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 KCNH3Q9ULD8 1083 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 LMTK2Q8IWU2 1503 aa14.83□□□□□ -0.04
GAPVD1-220ENST00000497580 CCDC196A0A1B0GTZ2 297 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 ATP1A2P50993 1020 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 HDGFP51858 240 aaKnown RBP14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 ACTN3Q08043 901 aaPredicted RBP14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 TFCP2Q12800 502 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 TBX2Q13207 712 aaPredicted RBP14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 MAP9Q49MG5 647 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 ZNF530Q6P9A1 599 aaPredicted RBP14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 TFR2Q9UP52 801 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 HECW2Q9P2P5 1572 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 CDHR2Q9BYE9 1310 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 GRM8O00222 908 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 N4BP2L2Q92802 583 aaPredicted RBP14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 TUBE1Q9UJT0 475 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 NEBLO76041 1014 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 CDC25AP30304 524 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 MATR3P43243 847 aaKnown RBP eCLIP14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 JMYQ8N9B5 988 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 ZNF609O15014 1411 aa14.82□□□□□ -0.04
GAPVD1-220ENST00000497580 GOLGA6BA6NDN3 693 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 AMOTL2Q9Y2J4 779 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 NF2P35240 595 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 WHAMMP3Q1A5X7 153 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 KIRREL3Q8IZU9 778 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 MAN1B1Q9UKM7 699 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 SETD1BQ9UPS6 1966 aaKnown RBP14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 NEO1Q92859 1461 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 PDE6BP35913 854 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 KIF23Q02241 960 aaPredicted RBP14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 PDCLQ13371 301 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 SLC39A14Q15043 492 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 POTEDQ86YR6 584 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 CABS1Q96KC9 395 aa14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 NUP88Q99567 741 aaPredicted RBP14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 RIMS1Q86UR5 1692 aaKnown RBP14.81□□□□□ -0.04
GAPVD1-220ENST00000497580 KCTD16Q68DU8 428 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 SND1Q7KZF4 910 aaKnown RBP eCLIP14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 BRAPQ7Z569 592 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 RIC3Q7Z5B4 369 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 VPS37DQ86XT2 251 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 NUTM2AQ8IVF1 878 aaPredicted RBP14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 RUFY1Q96T51 708 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 POLR2DO15514 142 aaKnown RBP14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 PRPF6O94906 941 aaKnown RBP14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 SLC39A6Q13433 755 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 SLC9C2Q5TAH2 1124 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 ALG1Q9BT22 464 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 AFMP43652 599 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 EIF4A1P60842 406 aaKnown RBP14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 SMYD4Q8IYR2 804 aaPredicted RBP14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 PHKBQ93100 1093 aa14.8□□□□□ -0.04
GAPVD1-220ENST00000497580 TRDNQ13061 729 aa14.79□□□□□ -0.04
GAPVD1-220ENST00000497580 LRCH2Q5VUJ6 765 aa14.79□□□□□ -0.04
GAPVD1-220ENST00000497580 MMS19Q96T76 1030 aa14.79□□□□□ -0.04
GAPVD1-220ENST00000497580 SERTAD1Q9UHV2 236 aa14.79□□□□□ -0.04
GAPVD1-220ENST00000497580 ALKQ9UM73 1620 aa14.79□□□□□ -0.04
GAPVD1-220ENST00000497580 ROBO2Q9HCK4 1378 aa14.79□□□□□ -0.04
GAPVD1-220ENST00000497580 CASP1P29466 404 aa14.79□□□□□ -0.04
GAPVD1-220ENST00000497580 WASHC4Q2M389 1173 aa14.79□□□□□ -0.04
GAPVD1-220ENST00000497580 ARHGEF25Q86VW2 580 aa14.79□□□□□ -0.04
GAPVD1-220ENST00000497580 ANKRD18AQ8IVF6 992 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms