RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 SALL4Q9UJQ4 1053 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 FOXD3Q9UJU5 478 aaPredicted RBP7.1□□□□□ -1.27
CSMD3-208ENST00000497026 PTPRUQ92729 1446 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 EREGO14944 169 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 FZD6O60353 706 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 FAM13AO94988 1023 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 KCNA6P17658 529 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 SERPINB4P48594 390 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 XKR5Q6UX68 686 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 MTMR7Q9Y216 660 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 F8W735 103 aaPredicted RBP7.09□□□□□ -1.28
CSMD3-208ENST00000497026 DDX3YO15523 660 aaKnown RBP7.09□□□□□ -1.28
CSMD3-208ENST00000497026 WISP1O95388 367 aa7.09□□□□□ -1.28
CSMD3-208ENST00000497026 NPR3P17342 541 aa7.09□□□□□ -1.28
CSMD3-208ENST00000497026 ZNF326Q5BKZ1 582 aaKnown RBP7.09□□□□□ -1.28
CSMD3-208ENST00000497026 MRPL18Q9H0U6 180 aaKnown RBP7.09□□□□□ -1.28
CSMD3-208ENST00000497026 TBX22Q9Y458 520 aa7.09□□□□□ -1.28
CSMD3-208ENST00000497026 TMEM94Q12767 1356 aa7.09□□□□□ -1.28
CSMD3-208ENST00000497026 PIK3R4Q99570 1358 aa7.09□□□□□ -1.28
CSMD3-208ENST00000497026 PHACTR2O75167 634 aa7.08□□□□□ -1.28
CSMD3-208ENST00000497026 TNFRSF21O75509 655 aa7.08□□□□□ -1.28
CSMD3-208ENST00000497026 PTPRAP18433 802 aa7.08□□□□□ -1.28
CSMD3-208ENST00000497026 TRIM26Q12899 539 aaPredicted RBP7.08□□□□□ -1.28
CSMD3-208ENST00000497026 SF3B2Q13435 895 aaKnown RBP7.08□□□□□ -1.28
CSMD3-208ENST00000497026 MUC3BQ9H195 1237 aa7.08□□□□□ -1.28
CSMD3-208ENST00000497026 DZANK1Q9NVP4 752 aa7.08□□□□□ -1.28
CSMD3-208ENST00000497026 METP08581 1390 aa7.08□□□□□ -1.28
CSMD3-208ENST00000497026 ANKRD30BQ9BXX2 1392 aa7.08□□□□□ -1.28
CSMD3-208ENST00000497026 ASXL1Q8IXJ9 1541 aa7.08□□□□□ -1.28
CSMD3-208ENST00000497026 NFKBIEO00221 500 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 FSCN2O14926 492 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 COBLO75128 1261 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 POLR3DP05423 398 aaPredicted RBP7.07□□□□□ -1.28
CSMD3-208ENST00000497026 H2AFB1P0C5Y9 115 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 H2AFB2P0C5Z0 115 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 GLB1P16278 677 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 CD68P34810 354 aaPredicted RBP7.07□□□□□ -1.28
CSMD3-208ENST00000497026 LRP8Q14114 963 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 CACTIN-AS1Q8N1I8 211 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 RETREG2Q8NC44 543 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 LATS2Q9NRM7 1088 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 TIMELESSQ9UNS1 1208 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 USTQ9Y2C2 406 aa7.07□□□□□ -1.28
CSMD3-208ENST00000497026 NALCNQ8IZF0 1738 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.06□□□□□ -1.28
CSMD3-208ENST00000497026 PRAG1Q86YV5 1406 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 RPGRIP1LQ68CZ1 1315 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 FAM177BA6PVY3 158 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 H3BRB1 525 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 PDE2AO00408 941 aaPredicted RBP7.06□□□□□ -1.28
CSMD3-208ENST00000497026 HGSNATQ68CP4 663 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 ACAD11Q709F0 780 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 MAP4K3Q8IVH8 894 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 UBASH3BQ8TF42 649 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 SLC7A3Q8WY07 619 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 KLHDC7BQ96G42 594 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 OSMRQ99650 979 aa7.06□□□□□ -1.28
CSMD3-208ENST00000497026 TUT1Q9H6E5 874 aaKnown RBP7.06□□□□□ -1.28
CSMD3-208ENST00000497026 SRA1Q9HD15 236 aaKnown RBP7.06□□□□□ -1.28
CSMD3-208ENST00000497026 MYOM2P54296 1465 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 NRXN1Q9ULB1 1477 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 PIK3C2GO75747 1445 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 ADGRF5Q8IZF2 1346 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 TXKP42681 527 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 FAM117BQ6P1L5 589 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 ZKSCAN3Q9BRR0 538 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 KRTAP4-7Q9BYR0 210 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 ADAM19Q9H013 955 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 KNDC1Q76NI1 1749 aa7.05□□□□□ -1.28
CSMD3-208ENST00000497026 NCOA3Q9Y6Q9 1424 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 ROBO1Q9Y6N7 1651 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 TM4SF5O14894 197 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 ICMTO60725 284 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 TOM1O60784 492 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 ADAM11O75078 769 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 RGL3Q3MIN7 710 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.04□□□□□ -1.28
CSMD3-208ENST00000497026 TMEM130Q8N3G9 435 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 SNX29Q8TEQ0 813 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 AMOTL2Q9Y2J4 779 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 LAMC1P11047 1609 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 PTCH1Q13635 1447 aa7.04□□□□□ -1.28
CSMD3-208ENST00000497026 YBX3P16989 372 aaKnown RBP eCLIP7.03□□□□□ -1.28
CSMD3-208ENST00000497026 USP5P45974 858 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 CABP4P57796 275 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 NLRP12P59046 1061 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 PIP4K2BP78356 416 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 DUOXA2Q1HG44 320 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 GLYCTKQ8IVS8 523 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 DZIP1LQ8IYY4 767 aaKnown RBP7.03□□□□□ -1.28
CSMD3-208ENST00000497026 GJD3Q8N144 294 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 ASAP3Q8TDY4 903 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 FOXD4L4Q8WXT5 416 aaPredicted RBP7.03□□□□□ -1.28
CSMD3-208ENST00000497026 PMEPA1Q969W9 287 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 UBL7Q96S82 380 aaPredicted RBP7.03□□□□□ -1.28
CSMD3-208ENST00000497026 SEC31BQ9NQW1 1179 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 MSH6P52701 1360 aa7.03□□□□□ -1.28
CSMD3-208ENST00000497026 H3BRJ5 948 aa7.02□□□□□ -1.29
CSMD3-208ENST00000497026 ECM1Q16610 540 aa7.02□□□□□ -1.29
CSMD3-208ENST00000497026 PRR23CQ6ZRP0 262 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms