RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 COL16A1Q07092 1604 aaPredicted RBP12.98□□□□□ -0.33
CHMP3-209ENST00000494623 ARID5BQ14865 1188 aa12.98□□□□□ -0.33
CHMP3-209ENST00000494623 DPCR1Q3MIW9 517 aa12.98□□□□□ -0.33
CHMP3-209ENST00000494623 ERFEQ4G0M1 354 aa12.98□□□□□ -0.33
CHMP3-209ENST00000494623 SMIM5Q71RC9 77 aa12.98□□□□□ -0.33
CHMP3-209ENST00000494623 CMTR1Q8N1G2 835 aaKnown RBP12.98□□□□□ -0.33
CHMP3-209ENST00000494623 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.98□□□□□ -0.33
CHMP3-209ENST00000494623 RAI14Q9P0K7 980 aa12.98□□□□□ -0.33
CHMP3-209ENST00000494623 ROBO1Q9Y6N7 1651 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 CDC25BP30305 580 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 GUCY1A2P33402 732 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 WTAPQ15007 396 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 FILIP1Q7Z7B0 1213 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 ADGRA1Q86SQ6 560 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 SDR42E1Q8WUS8 393 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 MRFAP1L1Q96HT8 127 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 CDC5LQ99459 802 aaKnown RBP12.97□□□□□ -0.33
CHMP3-209ENST00000494623 ZNF652Q9Y2D9 606 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 C3orf67Q6ZVT6 689 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 ANKRD18AQ8IVF6 992 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 CLIC6Q96NY7 704 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 PDCL3Q9H2J4 239 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 ERICH2A1L162 156 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 GTF2E1P29083 439 aaPredicted RBP12.97□□□□□ -0.33
CHMP3-209ENST00000494623 SYKP43405 635 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 SART3Q15020 963 aaKnown RBP12.97□□□□□ -0.33
CHMP3-209ENST00000494623 NUP133Q8WUM0 1156 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 STAG1Q8WVM7 1258 aa12.97□□□□□ -0.33
CHMP3-209ENST00000494623 MROH7-TTC4A0A0A0MT08 1334 aa12.96□□□□□ -0.33
CHMP3-209ENST00000494623 PNPLA7Q6ZV29 1317 aa12.96□□□□□ -0.33
CHMP3-209ENST00000494623 C4AP0C0L4 1744 aa12.96□□□□□ -0.33
CHMP3-209ENST00000494623 C4BP0C0L5 1744 aa12.96□□□□□ -0.33
CHMP3-209ENST00000494623 FMNL1O95466 1100 aaPredicted RBP12.96□□□□□ -0.33
CHMP3-209ENST00000494623 CHAF1AQ13111 956 aaPredicted RBP12.96□□□□□ -0.33
CHMP3-209ENST00000494623 PTPAQ15257 358 aa12.96□□□□□ -0.33
CHMP3-209ENST00000494623 SHC4Q6S5L8 630 aa12.96□□□□□ -0.33
CHMP3-209ENST00000494623 KCNJ14Q9UNX9 436 aa12.96□□□□□ -0.33
CHMP3-209ENST00000494623 SPATA31A5Q5VU36 1347 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 SPATA31A7Q8IWB4 1347 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 MAGEB6P1A0A0J9YX57 407 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 BTBD18B2RXH4 712 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 SMIM22K7EJ46 135 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 U2AF2P26368 475 aaKnown RBP eCLIP12.96□□□□□ -0.34
CHMP3-209ENST00000494623 PPARAQ07869 468 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 RTN1Q16799 776 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 LRRC8AQ8IWT6 810 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 JMYQ8N9B5 988 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 RGS22Q8NE09 1264 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 MAP3K14Q99558 947 aa12.96□□□□□ -0.34
CHMP3-209ENST00000494623 LRP5O75197 1615 aa12.95□□□□□ -0.34
CHMP3-209ENST00000494623 PPP6R2O75170 966 aa12.95□□□□□ -0.34
CHMP3-209ENST00000494623 IFNAR1P17181 557 aa12.95□□□□□ -0.34
CHMP3-209ENST00000494623 NLRP12P59046 1061 aa12.95□□□□□ -0.34
CHMP3-209ENST00000494623 SMARCC1Q92922 1105 aaPredicted RBP12.95□□□□□ -0.34
CHMP3-209ENST00000494623 GNL3LQ9NVN8 582 aaKnown RBP12.95□□□□□ -0.34
CHMP3-209ENST00000494623 RBM6P78332 1123 aaKnown RBP12.95□□□□□ -0.34
CHMP3-209ENST00000494623 TRIM22Q8IYM9 498 aa12.95□□□□□ -0.34
CHMP3-209ENST00000494623 WASF1Q92558 559 aa12.95□□□□□ -0.34
CHMP3-209ENST00000494623 C16orf45Q96MC5 204 aaPredicted RBP12.95□□□□□ -0.34
CHMP3-209ENST00000494623 RNF41Q9H4P4 317 aaPredicted RBP12.95□□□□□ -0.34
CHMP3-209ENST00000494623 RTL9Q8NET4 1388 aa12.95□□□□□ -0.34
CHMP3-209ENST00000494623 PLCH1Q4KWH8 1693 aa12.95□□□□□ -0.34
CHMP3-209ENST00000494623 DDX60Q8IY21 1712 aaKnown RBP12.94□□□□□ -0.34
CHMP3-209ENST00000494623 SAFBQ15424 915 aaKnown RBP eCLIP12.94□□□□□ -0.34
CHMP3-209ENST00000494623 CAVIN4Q5BKX8 364 aa12.94□□□□□ -0.34
CHMP3-209ENST00000494623 LINC00116Q8NCU8 138 aa12.94□□□□□ -0.34
CHMP3-209ENST00000494623 UBAC1Q9BSL1 405 aa12.94□□□□□ -0.34
CHMP3-209ENST00000494623 MYH14Q7Z406 1995 aaKnown RBP12.94□□□□□ -0.34
CHMP3-209ENST00000494623 DYNLL1P63167 89 aaKnown RBP12.94□□□□□ -0.34
CHMP3-209ENST00000494623 TPD52L1Q16890 204 aaPredicted RBP12.94□□□□□ -0.34
CHMP3-209ENST00000494623 SPECC1Q5M775 1068 aa12.94□□□□□ -0.34
CHMP3-209ENST00000494623 CLEC4GQ6UXB4 293 aa12.94□□□□□ -0.34
CHMP3-209ENST00000494623 TMTC2Q8N394 836 aa12.94□□□□□ -0.34
CHMP3-209ENST00000494623 MINPP1Q9UNW1 487 aa12.94□□□□□ -0.34
CHMP3-209ENST00000494623 RIOK3O14730 519 aaKnown RBP12.93□□□□□ -0.34
CHMP3-209ENST00000494623 SMC2O95347 1197 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 FAM98CQ17RN3 349 aaKnown RBP12.93□□□□□ -0.34
CHMP3-209ENST00000494623 NOSTRINQ8IVI9 506 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 DIS3L2Q8IYB7 885 aaKnown RBP12.93□□□□□ -0.34
CHMP3-209ENST00000494623 CRACR2BQ8N4Y2 399 aaPredicted RBP12.93□□□□□ -0.34
CHMP3-209ENST00000494623 FANCBQ8NB91 859 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 HPSEQ9Y251 543 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 STK36Q9NRP7 1315 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 CYP2D7A0A087X1C5 515 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 MMP1P03956 469 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 SKILP12757 684 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 ATP2B1P20020 1258 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 PNOCQ13519 176 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 UBE4AQ14139 1066 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 ZNF654Q8IZM8 581 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 CELF1Q92879 486 aaKnown RBP12.93□□□□□ -0.34
CHMP3-209ENST00000494623 TIGD1Q96MW7 591 aa12.93□□□□□ -0.34
CHMP3-209ENST00000494623 BSDC1Q9NW68 430 aaPredicted RBP12.93□□□□□ -0.34
CHMP3-209ENST00000494623 SF3B3Q15393 1217 aaKnown RBP12.92□□□□□ -0.34
CHMP3-209ENST00000494623 LONRF3Q496Y0 759 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 RESP18Q5W5W9 173 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 NBPF11Q86T75 865 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 CCDC24Q8N4L8 307 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 ARID3AQ99856 593 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 BPIFA3Q9BQP9 254 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms