RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 TCP10Q12799 353 aa17.9■□□□□ 0.46
PRPF40A-211ENST00000493468 NFIAQ12857 509 aa17.9■□□□□ 0.46
PRPF40A-211ENST00000493468 SCYL3Q8IZE3 742 aa17.9■□□□□ 0.46
PRPF40A-211ENST00000493468 ANKLE1Q8NAG6 615 aa17.9■□□□□ 0.46
PRPF40A-211ENST00000493468 FAM198AQ9UFP1 575 aa17.9■□□□□ 0.46
PRPF40A-211ENST00000493468 PHF20L1A8MW92 1017 aa17.89■□□□□ 0.45
PRPF40A-211ENST00000493468 SLC4A10Q6U841 1118 aa17.89■□□□□ 0.45
PRPF40A-211ENST00000493468 NECAB2Q7Z6G3 386 aa17.89■□□□□ 0.45
PRPF40A-211ENST00000493468 ANKRD44Q8N8A2 993 aa17.89■□□□□ 0.45
PRPF40A-211ENST00000493468 PAWRQ96IZ0 340 aaKnown RBP17.89■□□□□ 0.45
PRPF40A-211ENST00000493468 MYH2Q9UKX2 1941 aa17.89■□□□□ 0.45
PRPF40A-211ENST00000493468 PTPRAP18433 802 aa17.88■□□□□ 0.45
PRPF40A-211ENST00000493468 LRIT3Q3SXY7 679 aa17.88■□□□□ 0.45
PRPF40A-211ENST00000493468 PICK1Q9NRD5 415 aa17.88■□□□□ 0.45
PRPF40A-211ENST00000493468 STXBP5LQ9Y2K9 1186 aa17.88■□□□□ 0.45
PRPF40A-211ENST00000493468 AFG3L2Q9Y4W6 797 aa17.88■□□□□ 0.45
PRPF40A-211ENST00000493468 ZHX2Q9Y6X8 837 aa17.88■□□□□ 0.45
PRPF40A-211ENST00000493468 DDX60LQ5H9U9 1706 aaKnown RBP17.88■□□□□ 0.45
PRPF40A-211ENST00000493468 LOC285556D6RIA3 1793 aa17.88■□□□□ 0.45
PRPF40A-211ENST00000493468 RFX7Q2KHR2 1363 aa17.88■□□□□ 0.45
PRPF40A-211ENST00000493468 UNC80Q8N2C7 3258 aa17.87■□□□□ 0.45
PRPF40A-211ENST00000493468 MAP3K10Q02779 954 aa17.87■□□□□ 0.45
PRPF40A-211ENST00000493468 DIXDC1Q155Q3 683 aa17.87■□□□□ 0.45
PRPF40A-211ENST00000493468 SMCR8Q8TEV9 937 aaPredicted RBP17.87■□□□□ 0.45
PRPF40A-211ENST00000493468 COA7Q96BR5 231 aa17.87■□□□□ 0.45
PRPF40A-211ENST00000493468 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.87■□□□□ 0.45
PRPF40A-211ENST00000493468 ENTPD3O75355 529 aa17.86■□□□□ 0.45
PRPF40A-211ENST00000493468 SLC5A1P13866 664 aa17.86■□□□□ 0.45
PRPF40A-211ENST00000493468 FAM110CQ1W6H9 321 aa17.86■□□□□ 0.45
PRPF40A-211ENST00000493468 GADL1Q6ZQY3 521 aa17.86■□□□□ 0.45
PRPF40A-211ENST00000493468 DEFB123Q8N688 67 aa17.86■□□□□ 0.45
PRPF40A-211ENST00000493468 LPIN2Q92539 896 aa17.86■□□□□ 0.45
PRPF40A-211ENST00000493468 IDI2Q9BXS1 227 aa17.86■□□□□ 0.45
PRPF40A-211ENST00000493468 SALL1Q9NSC2 1324 aa17.86■□□□□ 0.45
PRPF40A-211ENST00000493468 ZBTB22O15209 634 aa17.85■□□□□ 0.45
PRPF40A-211ENST00000493468 PRDX5P30044 214 aa17.85■□□□□ 0.45
PRPF40A-211ENST00000493468 ZEB1P37275 1124 aaPredicted RBP17.85■□□□□ 0.45
PRPF40A-211ENST00000493468 DIS3LQ8TF46 1054 aaKnown RBP17.85■□□□□ 0.45
PRPF40A-211ENST00000493468 USP40Q9NVE5 1235 aa17.85■□□□□ 0.45
PRPF40A-211ENST00000493468 AGTPBP1Q9UPW5 1226 aa17.85■□□□□ 0.45
PRPF40A-211ENST00000493468 HMGCRP04035 888 aa17.84■□□□□ 0.45
PRPF40A-211ENST00000493468 LDHBP07195 334 aaKnown RBP17.84■□□□□ 0.45
PRPF40A-211ENST00000493468 CCDC184Q52MB2 194 aa17.84■□□□□ 0.45
PRPF40A-211ENST00000493468 ZFPM1Q8IX07 1006 aa17.84■□□□□ 0.45
PRPF40A-211ENST00000493468 C7orf61Q8IZ16 206 aa17.84■□□□□ 0.45
PRPF40A-211ENST00000493468 KLHDC4Q8TBB5 520 aa17.84■□□□□ 0.45
PRPF40A-211ENST00000493468 PNMA3Q9UL41 463 aa17.84■□□□□ 0.45
PRPF40A-211ENST00000493468 PLXNB2O15031 1838 aa17.84■□□□□ 0.45
PRPF40A-211ENST00000493468 CTNND1O60716 968 aaKnown RBP17.83■□□□□ 0.44
PRPF40A-211ENST00000493468 RGS3P49796 1198 aa17.83■□□□□ 0.44
PRPF40A-211ENST00000493468 TDHQ8IZJ6 230 aa17.83■□□□□ 0.44
PRPF40A-211ENST00000493468 NBPF3Q9H094 633 aa17.83■□□□□ 0.44
PRPF40A-211ENST00000493468 LRRFIP2Q9Y608 721 aaKnown RBP17.83■□□□□ 0.44
PRPF40A-211ENST00000493468 ATAD5Q96QE3 1844 aa17.83■□□□□ 0.44
PRPF40A-211ENST00000493468 GAKO14976 1311 aa17.82■□□□□ 0.44
PRPF40A-211ENST00000493468 EYA2O00167 538 aa17.82■□□□□ 0.44
PRPF40A-211ENST00000493468 SEMA3EO15041 775 aa17.82■□□□□ 0.44
PRPF40A-211ENST00000493468 ANKRD13CQ8N6S4 541 aa17.82■□□□□ 0.44
PRPF40A-211ENST00000493468 PROCA1Q8NCQ7 364 aaPredicted RBP17.82■□□□□ 0.44
PRPF40A-211ENST00000493468 MTMR10Q9NXD2 777 aa17.82■□□□□ 0.44
PRPF40A-211ENST00000493468 ZMYND8Q9ULU4 1186 aaPredicted RBP17.82■□□□□ 0.44
PRPF40A-211ENST00000493468 RPTORQ8N122 1335 aa17.81■□□□□ 0.44
PRPF40A-211ENST00000493468 GCLCP48506 637 aaPredicted RBP17.81■□□□□ 0.44
PRPF40A-211ENST00000493468 SH3BP5LQ7L8J4 393 aa17.81■□□□□ 0.44
PRPF40A-211ENST00000493468 SPINK5Q9NQ38 1064 aaPredicted RBP17.81■□□□□ 0.44
PRPF40A-211ENST00000493468 GNL3LQ9NVN8 582 aaKnown RBP17.81■□□□□ 0.44
PRPF40A-211ENST00000493468 TAOK2Q9UL54 1235 aa17.81■□□□□ 0.44
PRPF40A-211ENST00000493468 TRIM75PA6NK02 468 aa17.8■□□□□ 0.44
PRPF40A-211ENST00000493468 MAGEA10P43363 369 aaPredicted RBP17.8■□□□□ 0.44
PRPF40A-211ENST00000493468 RFX5P48382 616 aaPredicted RBP17.8■□□□□ 0.44
PRPF40A-211ENST00000493468 Q7L0L9 218 aa17.8■□□□□ 0.44
PRPF40A-211ENST00000493468 C11orf49Q9H6J7 331 aa17.8■□□□□ 0.44
PRPF40A-211ENST00000493468 HMX1Q9NP08 348 aaPredicted RBP17.8■□□□□ 0.44
PRPF40A-211ENST00000493468 FBXO3Q9UK99 471 aa17.8■□□□□ 0.44
PRPF40A-211ENST00000493468 DENND2AQ9ULE3 1009 aa17.8■□□□□ 0.44
PRPF40A-211ENST00000493468 TREML2Q5T2D2 321 aa17.79■□□□□ 0.44
PRPF40A-211ENST00000493468 ZGPATQ8N5A5 531 aaKnown RBP17.79■□□□□ 0.44
PRPF40A-211ENST00000493468 TBC1D2Q9BYX2 928 aa17.79■□□□□ 0.44
PRPF40A-211ENST00000493468 GJD2Q9UKL4 321 aa17.79■□□□□ 0.44
PRPF40A-211ENST00000493468 OGDHLQ9ULD0 1010 aa17.79■□□□□ 0.44
PRPF40A-211ENST00000493468 COL2A1P02458 1487 aaPredicted RBP17.78■□□□□ 0.44
PRPF40A-211ENST00000493468 DDTLA6NHG4 134 aaPredicted RBP17.78■□□□□ 0.44
PRPF40A-211ENST00000493468 TBC1D12O60347 775 aa17.78■□□□□ 0.44
PRPF40A-211ENST00000493468 ATG9AQ7Z3C6 839 aa17.78■□□□□ 0.44
PRPF40A-211ENST00000493468 ZSCAN29Q8IWY8 852 aaPredicted RBP17.78■□□□□ 0.44
PRPF40A-211ENST00000493468 FAM163AQ96GL9 167 aaPredicted RBP17.78■□□□□ 0.44
PRPF40A-211ENST00000493468 PTPRCP08575 1304 aa17.77■□□□□ 0.44
PRPF40A-211ENST00000493468 PDS5AQ29RF7 1337 aaKnown RBP17.77■□□□□ 0.44
PRPF40A-211ENST00000493468 PABPC4Q13310 644 aaKnown RBP eCLIP17.77■□□□□ 0.44
PRPF40A-211ENST00000493468 ATP2B3Q16720 1220 aa17.77■□□□□ 0.44
PRPF40A-211ENST00000493468 MAP3K21Q5TCX8 1036 aa17.77■□□□□ 0.44
PRPF40A-211ENST00000493468 SLF2Q8IX21 1173 aa17.77■□□□□ 0.44
PRPF40A-211ENST00000493468 USP44Q9H0E7 712 aa17.77■□□□□ 0.44
PRPF40A-211ENST00000493468 NPM3O75607 178 aaKnown RBP17.76■□□□□ 0.43
PRPF40A-211ENST00000493468 CIAO1O76071 339 aa17.76■□□□□ 0.43
PRPF40A-211ENST00000493468 SYN1P17600 705 aa17.76■□□□□ 0.43
PRPF40A-211ENST00000493468 COL25A1Q9BXS0 654 aaPredicted RBP17.76■□□□□ 0.43
PRPF40A-211ENST00000493468 UBE2OQ9C0C9 1292 aaKnown RBP17.76■□□□□ 0.43
PRPF40A-211ENST00000493468 OSBPL5Q9H0X9 879 aaPredicted RBP17.76■□□□□ 0.43
PRPF40A-211ENST00000493468 DDX4Q9NQI0 724 aaKnown RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms