RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 MFSD6Q6ZSS7 791 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 CLSTN2Q9H4D0 955 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 POLR3EQ9NVU0 708 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 ZSWIM5Q9P217 1185 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 ORC3Q9UBD5 711 aaPredicted RBP12.54□□□□□ -0.4
USP4-214ENST00000491791 LEMD3Q9Y2U8 911 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 SLC4A4Q9Y6R1 1079 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 NEDD4P46934 1319 aa12.54□□□□□ -0.4
USP4-214ENST00000491791 KIF13BQ9NQT8 1826 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 MAGEB6P1A0A0J9YX57 407 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 A0A1W2PQ27 194 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 A0A1W2PQ64 194 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 A0A1W2PQD8 194 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 B4E1Z4 1266 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 TOMM70O94826 608 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 YEATS4O95619 227 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 DPEP1P16444 411 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 HIBADHP31937 336 aaKnown RBP12.53□□□□□ -0.4
USP4-214ENST00000491791 GYG1P46976 350 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 CRY2Q49AN0 593 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 C8orf76Q96K31 380 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 NUP62CLQ9H1M0 184 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 FAM217BQ9NTX9 383 aaPredicted RBP12.53□□□□□ -0.4
USP4-214ENST00000491791 TFIP11Q9UBB9 837 aaKnown RBP12.53□□□□□ -0.4
USP4-214ENST00000491791 TACC3Q9Y6A5 838 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 TNRC6CQ9HCJ0 1690 aaKnown RBP12.53□□□□□ -0.4
USP4-214ENST00000491791 TAF1P21675 1872 aa12.53□□□□□ -0.4
USP4-214ENST00000491791 KLRG2A4D1S0 409 aaPredicted RBP12.52□□□□□ -0.41
USP4-214ENST00000491791 GOLGA6L4A6NEF3 574 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 ESPNB1AK53 854 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 CPLX1O14810 134 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 CTAGE5O15320 804 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 ZBTB43O43298 467 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 CCDC192P0DO97 292 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 IFNAR1P17181 557 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 LIG1P18858 919 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 METAP2P50579 478 aaKnown RBP eCLIP12.52□□□□□ -0.41
USP4-214ENST00000491791 GRAPQ13588 217 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 NFIXQ14938 502 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 MAP3K11Q16584 847 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 SBK1Q52WX2 424 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 NKX2-3Q8TAU0 364 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 GRAPLQ8TC17 118 aaPredicted RBP12.52□□□□□ -0.41
USP4-214ENST00000491791 ZNF384Q8TF68 577 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 NSUN4Q96CB9 384 aaKnown RBP12.52□□□□□ -0.41
USP4-214ENST00000491791 TRIM44Q96DX7 344 aaPredicted RBP12.52□□□□□ -0.41
USP4-214ENST00000491791 PIM2Q9P1W9 311 aa12.52□□□□□ -0.41
USP4-214ENST00000491791 MORC2Q9Y6X9 1032 aaPredicted RBP12.52□□□□□ -0.41
USP4-214ENST00000491791 CCDC196A0A1B0GTZ2 297 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 PRKAB2O43741 272 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 DTNBO60941 627 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 HOXA10P31260 410 aaPredicted RBP12.51□□□□□ -0.41
USP4-214ENST00000491791 PPARAQ07869 468 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 SART3Q15020 963 aaKnown RBP12.51□□□□□ -0.41
USP4-214ENST00000491791 DALRD3Q5D0E6 543 aaKnown RBP12.51□□□□□ -0.41
USP4-214ENST00000491791 TMEM67Q5HYA8 995 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 SPTY2D1Q68D10 685 aaPredicted RBP12.51□□□□□ -0.41
USP4-214ENST00000491791 ADALQ6DHV7 355 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 BICDL1Q6ZP65 573 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 ADGRA1Q86SQ6 560 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 ZSCAN30Q86W11 494 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 ENGASEQ8NFI3 743 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 USP28Q96RU2 1077 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 RRAGDQ9NQL2 400 aaPredicted RBP12.51□□□□□ -0.41
USP4-214ENST00000491791 DLEC1Q9Y238 1755 aa12.51□□□□□ -0.41
USP4-214ENST00000491791 MYH13Q9UKX3 1938 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 FAM237AA0A1B0GTK4 181 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 ORC4O43929 436 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 KDM4AO75164 1064 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 FMNL1O95466 1100 aaPredicted RBP12.5□□□□□ -0.41
USP4-214ENST00000491791 U2AF2P26368 475 aaKnown RBP eCLIP12.5□□□□□ -0.41
USP4-214ENST00000491791 TDO2P48775 406 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 KIF23Q02241 960 aaPredicted RBP12.5□□□□□ -0.41
USP4-214ENST00000491791 SEC23AQ15436 765 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 TMC4Q7Z404 712 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 VPS37DQ86XT2 251 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 TDRD7Q8NHU6 1098 aaKnown RBP12.5□□□□□ -0.41
USP4-214ENST00000491791 KCNG4Q8TDN1 519 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 WASF1Q92558 559 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 ATP8A2Q9NTI2 1148 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 DACT1Q9NYF0 836 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 RAI14Q9P0K7 980 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 NOL7Q9UMY1 257 aaKnown RBP12.5□□□□□ -0.41
USP4-214ENST00000491791 SLC12A7Q9Y666 1083 aa12.5□□□□□ -0.41
USP4-214ENST00000491791 CCDC88AQ3V6T2 1871 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 XDHP47989 1333 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 IFIT3O14879 490 aaKnown RBP12.49□□□□□ -0.41
USP4-214ENST00000491791 CDC27P30260 824 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 PPP4CP60510 307 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 CTDSPL2Q05D32 466 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 SNW1Q13573 536 aaKnown RBP12.49□□□□□ -0.41
USP4-214ENST00000491791 MYSM1Q5VVJ2 828 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 C9orf131Q5VYM1 1079 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 SYNE3Q6ZMZ3 975 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 CERS3Q8IU89 383 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 CNBD1Q8NA66 436 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 LINC00301Q8NCQ3 95 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 WDR66Q8TBY9 1149 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 ESR2Q92731 530 aa12.49□□□□□ -0.41
USP4-214ENST00000491791 TNMDQ9H2S6 317 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms