RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 ZKSCAN5Q9Y2L8 839 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 CEMIPQ8WUJ3 1361 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 TTC41PQ6P2S7 1318 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 NCAPD2Q15021 1401 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 PHRF1Q9P1Y6 1649 aaKnown RBP7.01□□□□□ -1.29
VPS41-214ENST00000490924 CRYBG1Q9Y4K1 1723 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 FAM208AQ9UK61 1670 aaKnown RBP7.01□□□□□ -1.29
VPS41-214ENST00000490924 GPR37L1O60883 481 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 SIN3BO75182 1162 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 TPM3P06753 285 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 CHMLP26374 656 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 FLIIQ13045 1269 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 HSP90AA2PQ14568 343 aaPredicted RBP7.01□□□□□ -1.29
VPS41-214ENST00000490924 RRS1Q15050 365 aaKnown RBP7.01□□□□□ -1.29
VPS41-214ENST00000490924 MCTP1Q6DN14 999 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 TXNDC2Q86VQ3 553 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 KCNB2Q92953 911 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 NAP1L5Q96NT1 182 aaPredicted RBP7.01□□□□□ -1.29
VPS41-214ENST00000490924 TM6SF1Q9BZW5 370 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 TSPYL4Q9UJ04 414 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 ZDHHC9Q9Y397 364 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 XRN1Q8IZH2 1706 aaKnown RBP7.01□□□□□ -1.29
VPS41-214ENST00000490924 FMN2Q9NZ56 1722 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.01□□□□□ -1.29
VPS41-214ENST00000490924 MAP3K19Q56UN5 1328 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 CCDC171Q6TFL3 1326 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 RAD50Q92878 1312 aa7.01□□□□□ -1.29
VPS41-214ENST00000490924 FAM83GA6ND36 823 aa7□□□□□ -1.29
VPS41-214ENST00000490924 GNAT3A8MTJ3 354 aa7□□□□□ -1.29
VPS41-214ENST00000490924 NCLP19338 710 aaKnown RBP7□□□□□ -1.29
VPS41-214ENST00000490924 HSPA4P34932 840 aa7□□□□□ -1.29
VPS41-214ENST00000490924 MTFR1Q15390 333 aa7□□□□□ -1.29
VPS41-214ENST00000490924 LRRC69Q6ZNQ3 347 aa7□□□□□ -1.29
VPS41-214ENST00000490924 TRIM50Q86XT4 487 aa7□□□□□ -1.29
VPS41-214ENST00000490924 PSMG3-AS1Q96PY0 264 aa7□□□□□ -1.29
VPS41-214ENST00000490924 GDPD2Q9HCC8 539 aa7□□□□□ -1.29
VPS41-214ENST00000490924 NWD1Q149M9 1564 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 M0R082 166 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 HIP1O00291 1037 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 ELL2O00472 640 aaPredicted RBP6.99□□□□□ -1.29
VPS41-214ENST00000490924 DYNC1I1O14576 645 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 SKIP12755 728 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 NEK4P51957 841 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 TAF7Q15545 349 aaPredicted RBP6.99□□□□□ -1.29
VPS41-214ENST00000490924 MTHFSDQ2M296 383 aaKnown RBP6.99□□□□□ -1.29
VPS41-214ENST00000490924 TRAPPC3LQ5T215 181 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 CAVIN1Q6NZI2 390 aaKnown RBP6.99□□□□□ -1.29
VPS41-214ENST00000490924 ERC1Q8IUD2 1116 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 AEBP1Q8IUX7 1158 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 ZNF417Q8TAU3 575 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 RHPN1Q8TCX5 695 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 GPT2Q8TD30 523 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 RUFY2Q8WXA3 655 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 KIF1BPQ96EK5 621 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 TRIM11Q96F44 468 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 ZSCAN31Q96LW9 406 aaPredicted RBP6.99□□□□□ -1.29
VPS41-214ENST00000490924 ZNF587Q96SQ5 575 aaPredicted RBP6.99□□□□□ -1.29
VPS41-214ENST00000490924 ALDH8A1Q9H2A2 487 aaPredicted RBP6.99□□□□□ -1.29
VPS41-214ENST00000490924 SH2B1Q9NRF2 756 aaPredicted RBP6.99□□□□□ -1.29
VPS41-214ENST00000490924 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.99□□□□□ -1.29
VPS41-214ENST00000490924 EID1Q9Y6B2 187 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 PARP3Q9Y6F1 533 aa6.99□□□□□ -1.29
VPS41-214ENST00000490924 RFX7Q2KHR2 1363 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 ABCC6O95255 1503 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 SERTM1A2A2V5 107 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 C9orf172C9J069 976 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 SGSM2O43147 1006 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 CAVIN2O95810 425 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 UBTFL1P0CB47 393 aaPredicted RBP6.98□□□□□ -1.29
VPS41-214ENST00000490924 RAC1P63000 192 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 GTF2IP78347 998 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 HMGN5P82970 282 aaKnown RBP6.98□□□□□ -1.29
VPS41-214ENST00000490924 HSP90AB2PQ58FF8 381 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 MCM10Q7L590 875 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 PRIMPOLQ96LW4 560 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 TSPY26PQ9H489 355 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 USP25Q9UHP3 1055 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 KLF15Q9UIH9 416 aa6.98□□□□□ -1.29
VPS41-214ENST00000490924 COL15A1P39059 1388 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 RPAP1Q9BWH6 1393 aaPredicted RBP6.97□□□□□ -1.29
VPS41-214ENST00000490924 PIK3C2AO00443 1686 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 TMEM229AB2RXF0 380 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 PRPF40AO75400 957 aaKnown RBP6.97□□□□□ -1.29
VPS41-214ENST00000490924 ALDH1L1O75891 902 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 GLRX3O76003 335 aaKnown RBP6.97□□□□□ -1.29
VPS41-214ENST00000490924 NOS2P35228 1153 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 GTF2F1P35269 517 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS41-214ENST00000490924 UBE2HP62256 183 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 MST1RQ04912 1400 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 IRF5Q13568 498 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 DCTN1Q14203 1278 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 TEAD4Q15561 434 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 HIF1AQ16665 826 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 CCDC183Q5T5S1 534 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 KIAA1211Q6ZU35 1233 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 C16orf71Q8IYS4 520 aaPredicted RBP6.97□□□□□ -1.29
VPS41-214ENST00000490924 CNTROBQ8N137 903 aa6.97□□□□□ -1.29
VPS41-214ENST00000490924 ZGPATQ8N5A5 531 aaKnown RBP6.97□□□□□ -1.29
VPS41-214ENST00000490924 OTUD7AQ8TE49 926 aaPredicted RBP6.97□□□□□ -1.29
VPS41-214ENST00000490924 GPATCH3Q96I76 525 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms