RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 C2CD4AQ8NCU7 369 aaPredicted RBP7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 GAL3ST3Q96A11 431 aa7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 RHOVQ96L33 236 aa7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 SPOCK3Q9BQ16 436 aa7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 SSU72Q9NP77 194 aaKnown RBP7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 PPP1R9AQ9ULJ8 1098 aa7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 HIF3AQ9Y2N7 669 aa7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 SUPT16HQ9Y5B9 1047 aaKnown RBP7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 PCDHGB7Q9Y5F8 929 aa7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 CSADQ9Y600 493 aa7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 ACTL7BQ9Y614 415 aa7.98□□□□□ -1.13
HMGB1P38-201ENST00000490557 TMPRSS2O15393 492 aa7.97□□□□□ -1.13
HMGB1P38-201ENST00000490557 BMP3P12645 472 aa7.97□□□□□ -1.13
HMGB1P38-201ENST00000490557 DOC2BQ14184 412 aa7.97□□□□□ -1.13
HMGB1P38-201ENST00000490557 WIPI1Q5MNZ9 446 aaPredicted RBP7.97□□□□□ -1.13
HMGB1P38-201ENST00000490557 ZNF654Q8IZM8 581 aa7.97□□□□□ -1.13
HMGB1P38-201ENST00000490557 MYRFLQ96LU7 910 aa7.97□□□□□ -1.13
HMGB1P38-201ENST00000490557 CCSER2Q9H7U1 834 aa7.97□□□□□ -1.13
HMGB1P38-201ENST00000490557 TPSG1Q9NRR2 321 aa7.97□□□□□ -1.13
HMGB1P38-201ENST00000490557 CRIM1Q9NZV1 1036 aa7.97□□□□□ -1.13
HMGB1P38-201ENST00000490557 PRAMEF27A3QJZ7 478 aa7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 RNGTTO60942 597 aaKnown RBP7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 ITGB2P05107 769 aa7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 ERCC5P28715 1186 aaPredicted RBP7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 ERVK-24P63145 666 aa7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 PTPN11Q06124 597 aaPredicted RBP7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 ZC3H12AQ5D1E8 599 aaKnown RBP7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 BNC2Q6ZN30 1099 aaPredicted RBP7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 KIAA0825Q8IV33 1275 aa7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 ZNF296Q8WUU4 475 aaPredicted RBP7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 FANCD2OSQ96PS1 177 aa7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 SPON2Q9BUD6 331 aa7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 CACNA2D2Q9NY47 1150 aa7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 SNCAIPQ9Y6H5 919 aa7.96□□□□□ -1.14
HMGB1P38-201ENST00000490557 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 F13A1P00488 732 aa7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 MAP4P27816 1152 aaKnown RBP7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 RPL6Q02878 288 aaKnown RBP7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 SGO2Q562F6 1265 aa7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 LRFN4Q6PJG9 635 aa7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 METTL16Q86W50 562 aaKnown RBP7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 C12orf40Q86WS4 652 aa7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 FAM20CQ8IXL6 584 aa7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 GATAD2BQ8WXI9 593 aa7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 PLPPR2Q96GM1 343 aa7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 SSBP4Q9BWG4 385 aaPredicted RBP7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 FAM105AQ9NUU6 356 aa7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 DDX41Q9UJV9 622 aaKnown RBP7.95□□□□□ -1.14
HMGB1P38-201ENST00000490557 HCLS1P14317 486 aaPredicted RBP7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 INPP5AQ14642 412 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 TTLL4Q14679 1199 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 CWF19L2Q2TBE0 894 aaKnown RBP7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 PPM1JQ5JR12 505 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 FBXL19Q6PCT2 694 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 CDC37L1Q7L3B6 337 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 ARMC10Q8N2F6 343 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 FBLIM1Q8WUP2 373 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 STOML1Q9UBI4 398 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 DAGLAQ9Y4D2 1042 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 PCDHGC5Q9Y5F6 944 aa7.94□□□□□ -1.14
HMGB1P38-201ENST00000490557 FAM95CA0A1B0GW59 222 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 PROCP04070 461 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 ETF1P62495 437 aaKnown RBP7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 MAP7Q14244 749 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 NFKBIBQ15653 356 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 PAOXQ6QHF9 649 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 BEND4Q6ZU67 534 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 SMYD4Q8IYR2 804 aaPredicted RBP7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 RNF214Q8ND24 703 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 TGIF2Q9GZN2 237 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 DISC1Q9NRI5 854 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 ADAMTS1Q9UHI8 967 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 RAXQ9Y2V3 346 aa7.93□□□□□ -1.14
HMGB1P38-201ENST00000490557 TLR3O15455 904 aaKnown RBP7.92□□□□□ -1.14
HMGB1P38-201ENST00000490557 PDE4BQ07343 736 aa7.92□□□□□ -1.14
HMGB1P38-201ENST00000490557 APOBRQ0VD83 1088 aa7.92□□□□□ -1.14
HMGB1P38-201ENST00000490557 MPP2Q14168 576 aa7.92□□□□□ -1.14
HMGB1P38-201ENST00000490557 CDPF1Q6NVV7 123 aa7.92□□□□□ -1.14
HMGB1P38-201ENST00000490557 PRR23CQ6ZRP0 262 aa7.92□□□□□ -1.14
HMGB1P38-201ENST00000490557 FAM196AQ6ZSG2 479 aa7.92□□□□□ -1.14
HMGB1P38-201ENST00000490557 CLEC10AQ8IUN9 316 aa7.92□□□□□ -1.14
HMGB1P38-201ENST00000490557 ROBO2Q9HCK4 1378 aa7.92□□□□□ -1.14
HMGB1P38-201ENST00000490557 FANCGO15287 622 aa7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 CILPO75339 1184 aa7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 NFICP08651 508 aa7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 CDK8P49336 464 aa7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 RACK1P63244 317 aaKnown RBP7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 KCT2Q8NC54 265 aa7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 ZNF507Q8TCN5 953 aa7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 GSX1Q9H4S2 264 aaPredicted RBP7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 LGR6Q9HBX8 967 aa7.91□□□□□ -1.14
HMGB1P38-201ENST00000490557 FAM221AA4D161 298 aa7.9□□□□□ -1.14
HMGB1P38-201ENST00000490557 GARTP22102 1010 aa7.9□□□□□ -1.14
HMGB1P38-201ENST00000490557 MCM4P33991 863 aa7.9□□□□□ -1.14
HMGB1P38-201ENST00000490557 GNL2Q13823 731 aaKnown RBP7.9□□□□□ -1.14
HMGB1P38-201ENST00000490557 ZBTB37Q5TC79 503 aa7.9□□□□□ -1.14
HMGB1P38-201ENST00000490557 CYFIP1Q7L576 1253 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms