RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 ARMT1Q9H993 441 aa13.09□□□□□ -0.31
VPS13D-210ENST00000489961 GBA2Q9HCG7 927 aaPredicted RBP13.09□□□□□ -0.31
VPS13D-210ENST00000489961 DDX4Q9NQI0 724 aaKnown RBP13.09□□□□□ -0.31
VPS13D-210ENST00000489961 CREBZFQ9NS37 354 aa13.09□□□□□ -0.31
VPS13D-210ENST00000489961 PAPPA2Q9BXP8 1791 aa13.09□□□□□ -0.31
VPS13D-210ENST00000489961 MYH1P12882 1939 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 HIP1O00291 1037 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 PPP1R12BO60237 982 aaPredicted RBP13.08□□□□□ -0.32
VPS13D-210ENST00000489961 FKBP1BP68106 108 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 TTLL12Q14166 644 aaPredicted RBP13.08□□□□□ -0.32
VPS13D-210ENST00000489961 ZMYM1Q5SVZ6 1142 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 ARMC9Q7Z3E5 817 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 MAPKAPK5Q8IW41 473 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 ZFPM1Q8IX07 1006 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 LCORLQ8N3X6 602 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 OSBP2Q969R2 916 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 ABT1Q9ULW3 272 aaKnown RBP13.08□□□□□ -0.32
VPS13D-210ENST00000489961 COL2A1P02458 1487 aaPredicted RBP13.08□□□□□ -0.32
VPS13D-210ENST00000489961 FLT1P17948 1338 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 NAV1Q8NEY1 1877 aa13.08□□□□□ -0.32
VPS13D-210ENST00000489961 SDSP20132 328 aa13.07□□□□□ -0.32
VPS13D-210ENST00000489961 DCAF15Q66K64 600 aa13.07□□□□□ -0.32
VPS13D-210ENST00000489961 SKAP1Q86WV1 359 aa13.07□□□□□ -0.32
VPS13D-210ENST00000489961 DDRGK1Q96HY6 314 aa13.07□□□□□ -0.32
VPS13D-210ENST00000489961 CSRNP1Q96S65 589 aa13.07□□□□□ -0.32
VPS13D-210ENST00000489961 DHX36Q9H2U1 1008 aaKnown RBP13.07□□□□□ -0.32
VPS13D-210ENST00000489961 HELLSQ9NRZ9 838 aa13.07□□□□□ -0.32
VPS13D-210ENST00000489961 DIAPH3Q9NSV4 1193 aa13.07□□□□□ -0.32
VPS13D-210ENST00000489961 SSC5DA1L4H1 1573 aa13.07□□□□□ -0.32
VPS13D-210ENST00000489961 ATRNL1Q5VV63 1379 aa13.07□□□□□ -0.32
VPS13D-210ENST00000489961 M0R2C6 588 aa13.06□□□□□ -0.32
VPS13D-210ENST00000489961 GPAA1O43292 621 aa13.06□□□□□ -0.32
VPS13D-210ENST00000489961 GNAT2P19087 354 aa13.06□□□□□ -0.32
VPS13D-210ENST00000489961 PRKG1Q13976 671 aa13.06□□□□□ -0.32
VPS13D-210ENST00000489961 CDAN1Q8IWY9 1227 aa13.06□□□□□ -0.32
VPS13D-210ENST00000489961 SDR42E1Q8WUS8 393 aa13.06□□□□□ -0.32
VPS13D-210ENST00000489961 STRBPQ96SI9 672 aaKnown RBP13.06□□□□□ -0.32
VPS13D-210ENST00000489961 ATP8A2Q9NTI2 1148 aa13.06□□□□□ -0.32
VPS13D-210ENST00000489961 ANGEL1Q9UNK9 670 aaKnown RBP13.06□□□□□ -0.32
VPS13D-210ENST00000489961 TLL2Q9Y6L7 1015 aa13.06□□□□□ -0.32
VPS13D-210ENST00000489961 SLC4A4Q9Y6R1 1079 aa13.06□□□□□ -0.32
VPS13D-210ENST00000489961 DDTLA6NHG4 134 aaPredicted RBP13.05□□□□□ -0.32
VPS13D-210ENST00000489961 HLA-DOAP06340 250 aa13.05□□□□□ -0.32
VPS13D-210ENST00000489961 IREB2P48200 963 aaKnown RBP13.05□□□□□ -0.32
VPS13D-210ENST00000489961 NMIQ13287 307 aaPredicted RBP13.05□□□□□ -0.32
VPS13D-210ENST00000489961 MCMDC2Q4G0Z9 681 aa13.05□□□□□ -0.32
VPS13D-210ENST00000489961 SH3BP5LQ7L8J4 393 aa13.05□□□□□ -0.32
VPS13D-210ENST00000489961 SAPCD2Q86UD0 394 aa13.05□□□□□ -0.32
VPS13D-210ENST00000489961 SEC62Q99442 399 aaKnown RBP13.05□□□□□ -0.32
VPS13D-210ENST00000489961 PI4KBQ9UBF8 816 aa13.05□□□□□ -0.32
VPS13D-210ENST00000489961 SAP30BPQ9UHR5 308 aaKnown RBP13.05□□□□□ -0.32
VPS13D-210ENST00000489961 DDX60LQ5H9U9 1706 aaKnown RBP13.05□□□□□ -0.32
VPS13D-210ENST00000489961 BAZ2AQ9UIF9 1905 aaKnown RBP13.04□□□□□ -0.32
VPS13D-210ENST00000489961 A0A0D9SFI3 127 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 PRKAB2O43741 272 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 USP2O75604 605 aaPredicted RBP13.04□□□□□ -0.32
VPS13D-210ENST00000489961 POLR3DP05423 398 aaPredicted RBP13.04□□□□□ -0.32
VPS13D-210ENST00000489961 MFAP1P55081 439 aaKnown RBP13.04□□□□□ -0.32
VPS13D-210ENST00000489961 HUNKP57058 714 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 MAP3K11Q16584 847 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 BMP2KLQ5H9B9 411 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 MOB2Q70IA6 237 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 MIGA2Q7L4E1 593 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 TTC6Q86TZ1 520 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 AMOTL1Q8IY63 956 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 FAM227BQ96M60 508 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 TRIM34Q9BYJ4 488 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 ZNF341Q9BYN7 854 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 DCP1AQ9NPI6 582 aaPredicted RBP13.04□□□□□ -0.32
VPS13D-210ENST00000489961 MCM9Q9NXL9 1143 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 PALD1Q9ULE6 856 aa13.04□□□□□ -0.32
VPS13D-210ENST00000489961 UNCXA6NJT0 531 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 PATL2C9JE40 543 aaKnown RBP13.03□□□□□ -0.32
VPS13D-210ENST00000489961 UBE2Q2LH0YL09 131 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 APPP05067 770 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 HTRA3P83110 453 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 DEFB115Q30KQ5 88 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 GIMAP6Q6P9H5 292 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 CWC27Q6UX04 472 aaKnown RBP13.03□□□□□ -0.32
VPS13D-210ENST00000489961 CRACR2BQ8N4Y2 399 aaPredicted RBP13.03□□□□□ -0.32
VPS13D-210ENST00000489961 RUFY2Q8WXA3 655 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 HHIPL1Q96JK4 782 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 NACAP1Q9BZK3 213 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 MKRN1Q9UHC7 482 aaKnown RBP13.03□□□□□ -0.32
VPS13D-210ENST00000489961 HERC5Q9UII4 1024 aaKnown RBP13.03□□□□□ -0.32
VPS13D-210ENST00000489961 FZD1Q9UP38 647 aa13.03□□□□□ -0.32
VPS13D-210ENST00000489961 SIPA1L1O43166 1804 aa13.02□□□□□ -0.32
VPS13D-210ENST00000489961 OTOFQ9HC10 1997 aa13.02□□□□□ -0.32
VPS13D-210ENST00000489961 RASSF10A6NK89 507 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 GSG1L2A8MUP6 293 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 TBC1D12O60347 775 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 TDO2P48775 406 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 LDLRAD1Q5T700 205 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 RGMBQ6NW40 437 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 CCDC129Q6ZRS4 1044 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 PAXIP1Q6ZW49 1069 aaPredicted RBP13.02□□□□□ -0.33
VPS13D-210ENST00000489961 FOXP4Q8IVH2 680 aaPredicted RBP13.02□□□□□ -0.33
VPS13D-210ENST00000489961 ANKRD13AQ8IZ07 590 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 KLRG1Q96E93 195 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 WRNIP1Q96S55 665 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms