RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 UPF2Q9HAU5 1272 aaKnown RBP16.58■□□□□ 0.24
C9orf3-221ENST00000489562 DCP1AQ9NPI6 582 aaPredicted RBP16.58■□□□□ 0.24
C9orf3-221ENST00000489562 U3KPZ7 1027 aaPredicted RBP16.58■□□□□ 0.24
C9orf3-221ENST00000489562 FLT1P17948 1338 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 MYH8P13535 1937 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 CLRN2A0PK11 232 aa16.57■□□□□ 0.24
C9orf3-221ENST00000489562 FOXP2O15409 715 aa16.57■□□□□ 0.24
C9orf3-221ENST00000489562 TDO2P48775 406 aa16.57■□□□□ 0.24
C9orf3-221ENST00000489562 HIRAP54198 1017 aaPredicted RBP16.57■□□□□ 0.24
C9orf3-221ENST00000489562 PTH1RQ03431 593 aa16.57■□□□□ 0.24
C9orf3-221ENST00000489562 VEZTQ9HBM0 779 aa16.57■□□□□ 0.24
C9orf3-221ENST00000489562 ARPP21Q9UBL0 812 aaPredicted RBP16.57■□□□□ 0.24
C9orf3-221ENST00000489562 MKRN1Q9UHC7 482 aaKnown RBP16.57■□□□□ 0.24
C9orf3-221ENST00000489562 YY1P25490 414 aa16.56■□□□□ 0.24
C9orf3-221ENST00000489562 NFIAQ12857 509 aa16.56■□□□□ 0.24
C9orf3-221ENST00000489562 PICALMQ13492 652 aa16.56■□□□□ 0.24
C9orf3-221ENST00000489562 MAPKAPK5Q8IW41 473 aa16.56■□□□□ 0.24
C9orf3-221ENST00000489562 OSBPL5Q9H0X9 879 aaPredicted RBP16.56■□□□□ 0.24
C9orf3-221ENST00000489562 DHX36Q9H2U1 1008 aaKnown RBP16.56■□□□□ 0.24
C9orf3-221ENST00000489562 RRAGCQ9HB90 399 aa16.56■□□□□ 0.24
C9orf3-221ENST00000489562 EPB41L4AQ9HCS5 686 aaPredicted RBP16.56■□□□□ 0.24
C9orf3-221ENST00000489562 MCM9Q9NXL9 1143 aa16.56■□□□□ 0.24
C9orf3-221ENST00000489562 GGA3Q9NZ52 723 aa16.56■□□□□ 0.24
C9orf3-221ENST00000489562 FAM198AQ9UFP1 575 aa16.56■□□□□ 0.24
C9orf3-221ENST00000489562 TAOK2Q9UL54 1235 aa16.56■□□□□ 0.24
C9orf3-221ENST00000489562 ATRNL1Q5VV63 1379 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 TCP10L2B9ZVM9 353 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 FGAP02671 866 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 MCCP23508 829 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 CACNB3P54284 484 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 SBK1Q52WX2 424 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 ANGEL2Q5VTE6 544 aaKnown RBP16.55■□□□□ 0.24
C9orf3-221ENST00000489562 RNF20Q5VTR2 975 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 FAM151AQ8WW52 585 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 DCPSQ96C86 337 aaKnown RBP16.55■□□□□ 0.24
C9orf3-221ENST00000489562 USP26Q9BXU7 913 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 DDX4Q9NQI0 724 aaKnown RBP16.55■□□□□ 0.24
C9orf3-221ENST00000489562 PGAP2Q9UHJ9 254 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 PPP2R3BQ9Y5P8 575 aa16.55■□□□□ 0.24
C9orf3-221ENST00000489562 RBM8AQ9Y5S9 174 aaKnown RBP16.55■□□□□ 0.24
C9orf3-221ENST00000489562 IMMTQ16891 758 aaKnown RBP16.54■□□□□ 0.24
C9orf3-221ENST00000489562 EAPPQ56P03 285 aaPredicted RBP16.54■□□□□ 0.24
C9orf3-221ENST00000489562 TTC6Q86TZ1 520 aa16.54■□□□□ 0.24
C9orf3-221ENST00000489562 NMRK2Q9NPI5 230 aa16.54■□□□□ 0.24
C9orf3-221ENST00000489562 CNTNAP1P78357 1384 aa16.53■□□□□ 0.24
C9orf3-221ENST00000489562 ASTN2O75129 1339 aaPredicted RBP16.53■□□□□ 0.24
C9orf3-221ENST00000489562 USP17L12C9JPN9 530 aa16.53■□□□□ 0.24
C9orf3-221ENST00000489562 USP17L21D6R901 530 aa16.53■□□□□ 0.24
C9orf3-221ENST00000489562 SEC24BO95487 1268 aa16.53■□□□□ 0.24
C9orf3-221ENST00000489562 POLR3DP05423 398 aaPredicted RBP16.53■□□□□ 0.24
C9orf3-221ENST00000489562 HLA-DOAP06340 250 aa16.53■□□□□ 0.24
C9orf3-221ENST00000489562 TCP10Q12799 353 aa16.53■□□□□ 0.24
C9orf3-221ENST00000489562 CTR9Q6PD62 1173 aa16.53■□□□□ 0.24
C9orf3-221ENST00000489562 SULF1Q8IWU6 871 aa16.53■□□□□ 0.24
C9orf3-221ENST00000489562 ZNF526Q8TF50 670 aaPredicted RBP16.53■□□□□ 0.24
C9orf3-221ENST00000489562 GPBP1L1Q9HC44 474 aaPredicted RBP16.53■□□□□ 0.24
C9orf3-221ENST00000489562 SIPA1L1O43166 1804 aa16.53■□□□□ 0.24
C9orf3-221ENST00000489562 ZNF213O14771 459 aa16.52■□□□□ 0.24
C9orf3-221ENST00000489562 SLC3A2P08195 630 aaKnown RBP16.52■□□□□ 0.24
C9orf3-221ENST00000489562 HSPA4P34932 840 aa16.52■□□□□ 0.24
C9orf3-221ENST00000489562 RASA3Q14644 834 aa16.52■□□□□ 0.24
C9orf3-221ENST00000489562 NECTIN1Q15223 517 aa16.52■□□□□ 0.24
C9orf3-221ENST00000489562 C12orf60Q5U649 245 aa16.52■□□□□ 0.24
C9orf3-221ENST00000489562 LDHDQ86WU2 507 aa16.52■□□□□ 0.24
C9orf3-221ENST00000489562 ZSCAN29Q8IWY8 852 aaPredicted RBP16.52■□□□□ 0.24
C9orf3-221ENST00000489562 HOOK2Q96ED9 719 aa16.52■□□□□ 0.24
C9orf3-221ENST00000489562 DEFB129Q9H1M3 183 aa16.52■□□□□ 0.24
C9orf3-221ENST00000489562 ANAPC4Q9UJX5 808 aa16.52■□□□□ 0.24
C9orf3-221ENST00000489562 ROBO3Q96MS0 1386 aa16.51■□□□□ 0.23
C9orf3-221ENST00000489562 PCP11498 1178 aaKnown RBP16.51■□□□□ 0.23
C9orf3-221ENST00000489562 ZKSCAN1P17029 563 aaPredicted RBP16.51■□□□□ 0.23
C9orf3-221ENST00000489562 PPARAQ07869 468 aa16.51■□□□□ 0.23
C9orf3-221ENST00000489562 EHD4Q9H223 541 aa16.51■□□□□ 0.23
C9orf3-221ENST00000489562 PI4KBQ9UBF8 816 aa16.51■□□□□ 0.23
C9orf3-221ENST00000489562 SAP30BPQ9UHR5 308 aaKnown RBP16.51■□□□□ 0.23
C9orf3-221ENST00000489562 PALD1Q9ULE6 856 aa16.51■□□□□ 0.23
C9orf3-221ENST00000489562 CLEC11AQ9Y240 323 aa16.51■□□□□ 0.23
C9orf3-221ENST00000489562 MINDY4BA8MYZ0 360 aa16.5■□□□□ 0.23
C9orf3-221ENST00000489562 NT5C2P49902 561 aa16.5■□□□□ 0.23
C9orf3-221ENST00000489562 CREB3L3Q68CJ9 461 aa16.5■□□□□ 0.23
C9orf3-221ENST00000489562 CDC37L1Q7L3B6 337 aa16.5■□□□□ 0.23
C9orf3-221ENST00000489562 KRT26Q7Z3Y9 468 aa16.5■□□□□ 0.23
C9orf3-221ENST00000489562 KCNB2Q92953 911 aa16.5■□□□□ 0.23
C9orf3-221ENST00000489562 ZNF287Q9HBT7 754 aa16.5■□□□□ 0.23
C9orf3-221ENST00000489562 DDTLA6NHG4 134 aaPredicted RBP16.49■□□□□ 0.23
C9orf3-221ENST00000489562 SLC27A2O14975 620 aa16.49■□□□□ 0.23
C9orf3-221ENST00000489562 CYP21A2P08686 494 aa16.49■□□□□ 0.23
C9orf3-221ENST00000489562 ANAPC15P60006 121 aa16.49■□□□□ 0.23
C9orf3-221ENST00000489562 KRT32Q14532 448 aa16.49■□□□□ 0.23
C9orf3-221ENST00000489562 TSGA10IPQ3SY00 556 aa16.49■□□□□ 0.23
C9orf3-221ENST00000489562 FOXP4Q8IVH2 680 aaPredicted RBP16.49■□□□□ 0.23
C9orf3-221ENST00000489562 ZFPM1Q8IX07 1006 aa16.49■□□□□ 0.23
C9orf3-221ENST00000489562 CSRNP1Q96S65 589 aa16.49■□□□□ 0.23
C9orf3-221ENST00000489562 TMEM39BQ9GZU3 492 aa16.49■□□□□ 0.23
C9orf3-221ENST00000489562 RNF41Q9H4P4 317 aaPredicted RBP16.49■□□□□ 0.23
C9orf3-221ENST00000489562 HERC5Q9UII4 1024 aaKnown RBP16.49■□□□□ 0.23
C9orf3-221ENST00000489562 SERPINB13Q9UIV8 391 aa16.49■□□□□ 0.23
C9orf3-221ENST00000489562 TRPM7Q96QT4 1865 aa16.48■□□□□ 0.23
C9orf3-221ENST00000489562 PDE4BQ07343 736 aa16.48■□□□□ 0.23
C9orf3-221ENST00000489562 SUPT20HL1Q3ZLR7 823 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms