RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 SPDYE6P0CI01 402 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 CUL4AQ13619 759 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 IMMTQ16891 758 aaKnown RBP18.86■□□□□ 0.61
SYNE1-227ENST00000489156 KIF4BQ2VIQ3 1234 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 NBPF9Q3BBW0 867 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 MTMR14Q8NCE2 650 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 TRPM4Q8TD43 1214 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 INTS4Q96HW7 963 aaKnown RBP18.86■□□□□ 0.61
SYNE1-227ENST00000489156 RIOK1Q9BRS2 568 aaKnown RBP18.86■□□□□ 0.61
SYNE1-227ENST00000489156 NOL10Q9BSC4 688 aaKnown RBP18.86■□□□□ 0.61
SYNE1-227ENST00000489156 ARMT1Q9H993 441 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 LIMCH1Q9UPQ0 1083 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 CDK5RAP2Q96SN8 1893 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 ZMYM6O95789 1325 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 MBD4O95243 580 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 BAG3O95817 575 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 AK2P54819 239 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 ANKRD1Q15327 319 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 ALX1Q15699 326 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 TDRD3Q9H7E2 651 aaKnown RBP18.86■□□□□ 0.61
SYNE1-227ENST00000489156 RRAGCQ9HB90 399 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 ADARB2Q9NS39 739 aaKnown RBP18.86■□□□□ 0.61
SYNE1-227ENST00000489156 PATL2C9JE40 543 aaKnown RBP18.85■□□□□ 0.61
SYNE1-227ENST00000489156 RPS6KB1P23443 525 aa18.85■□□□□ 0.61
SYNE1-227ENST00000489156 PPP4CP60510 307 aa18.85■□□□□ 0.61
SYNE1-227ENST00000489156 LCORLQ8N3X6 602 aa18.85■□□□□ 0.61
SYNE1-227ENST00000489156 ZBED3Q96IU2 234 aaPredicted RBP18.85■□□□□ 0.61
SYNE1-227ENST00000489156 IQCA1LA6NCM1 817 aa18.84■□□□□ 0.61
SYNE1-227ENST00000489156 EPHX2P34913 555 aa18.84■□□□□ 0.61
SYNE1-227ENST00000489156 HIRAP54198 1017 aaPredicted RBP18.84■□□□□ 0.61
SYNE1-227ENST00000489156 CDC42EP5Q6NZY7 148 aa18.84■□□□□ 0.61
SYNE1-227ENST00000489156 SH3RF3Q8TEJ3 882 aaPredicted RBP18.84■□□□□ 0.61
SYNE1-227ENST00000489156 ZSCAN31Q96LW9 406 aaPredicted RBP18.84■□□□□ 0.61
SYNE1-227ENST00000489156 USP40Q9NVE5 1235 aa18.84■□□□□ 0.61
SYNE1-227ENST00000489156 TAF6LQ9Y6J9 622 aa18.84■□□□□ 0.61
SYNE1-227ENST00000489156 RHBDL3P58872 404 aa18.84■□□□□ 0.61
SYNE1-227ENST00000489156 CLRN2A0PK11 232 aa18.83■□□□□ 0.6
SYNE1-227ENST00000489156 CPA1P15085 419 aa18.83■□□□□ 0.6
SYNE1-227ENST00000489156 TAF1DQ9H5J8 278 aaPredicted RBP18.83■□□□□ 0.6
SYNE1-227ENST00000489156 NMRK2Q9NPI5 230 aa18.83■□□□□ 0.6
SYNE1-227ENST00000489156 SH2B1Q9NRF2 756 aaPredicted RBP18.83■□□□□ 0.6
SYNE1-227ENST00000489156 ASTN2O75129 1339 aaPredicted RBP18.83■□□□□ 0.6
SYNE1-227ENST00000489156 ZNF213O14771 459 aa18.82■□□□□ 0.6
SYNE1-227ENST00000489156 CACNB3P54284 484 aa18.82■□□□□ 0.6
SYNE1-227ENST00000489156 BAZ2AQ9UIF9 1905 aaKnown RBP18.82■□□□□ 0.6
SYNE1-227ENST00000489156 E7EWF7 191 aa18.82■□□□□ 0.6
SYNE1-227ENST00000489156 PRKAB2O43741 272 aa18.82■□□□□ 0.6
SYNE1-227ENST00000489156 MYO1BO43795 1136 aa18.82■□□□□ 0.6
SYNE1-227ENST00000489156 APPP05067 770 aa18.82■□□□□ 0.6
SYNE1-227ENST00000489156 VEGFAP15692 232 aaPredicted RBP18.82■□□□□ 0.6
SYNE1-227ENST00000489156 PLCG2P16885 1265 aa18.82■□□□□ 0.6
SYNE1-227ENST00000489156 DHX32Q7L7V1 743 aaKnown RBP18.82■□□□□ 0.6
SYNE1-227ENST00000489156 NACAP1Q9BZK3 213 aa18.82■□□□□ 0.6
SYNE1-227ENST00000489156 ZNF70Q9UC06 446 aaPredicted RBP18.82■□□□□ 0.6
SYNE1-227ENST00000489156 FOCADQ5VW36 1801 aa18.81■□□□□ 0.6
SYNE1-227ENST00000489156 EAPPQ56P03 285 aaPredicted RBP18.81■□□□□ 0.6
SYNE1-227ENST00000489156 STOX1Q6ZVD7 989 aa18.81■□□□□ 0.6
SYNE1-227ENST00000489156 USP50Q70EL3 339 aaPredicted RBP18.81■□□□□ 0.6
SYNE1-227ENST00000489156 TEX11Q8IYF3 940 aa18.81■□□□□ 0.6
SYNE1-227ENST00000489156 SDR42E1Q8WUS8 393 aa18.81■□□□□ 0.6
SYNE1-227ENST00000489156 SPDYE2Q495Y8 402 aa18.8■□□□□ 0.6
SYNE1-227ENST00000489156 CERS3Q8IU89 383 aa18.8■□□□□ 0.6
SYNE1-227ENST00000489156 IFNL3Q8IZI9 196 aa18.8■□□□□ 0.6
SYNE1-227ENST00000489156 TGFBRAP1Q8WUH2 860 aa18.8■□□□□ 0.6
SYNE1-227ENST00000489156 CRNKL1Q9BZJ0 848 aaKnown RBP18.8■□□□□ 0.6
SYNE1-227ENST00000489156 SCAF8Q9UPN6 1271 aaKnown RBP18.8■□□□□ 0.6
SYNE1-227ENST00000489156 SLC4A4Q9Y6R1 1079 aa18.8■□□□□ 0.6
SYNE1-227ENST00000489156 GSG1L2A8MUP6 293 aa18.8■□□□□ 0.6
SYNE1-227ENST00000489156 WDHD1O75717 1129 aaPredicted RBP18.8■□□□□ 0.6
SYNE1-227ENST00000489156 NFIAQ12857 509 aa18.8■□□□□ 0.6
SYNE1-227ENST00000489156 VEZTQ9HBM0 779 aa18.8■□□□□ 0.6
SYNE1-227ENST00000489156 FOXD4L1Q9NU39 408 aa18.8■□□□□ 0.6
SYNE1-227ENST00000489156 EXOSC10Q01780 885 aaKnown RBP18.79■□□□□ 0.6
SYNE1-227ENST00000489156 PICALMQ13492 652 aa18.79■□□□□ 0.6
SYNE1-227ENST00000489156 NOL8Q76FK4 1167 aaKnown RBP18.79■□□□□ 0.6
SYNE1-227ENST00000489156 FBXL16Q8N461 479 aa18.79■□□□□ 0.6
SYNE1-227ENST00000489156 NAPBQ9H115 298 aa18.79■□□□□ 0.6
SYNE1-227ENST00000489156 TMOD2Q9NZR1 351 aa18.79■□□□□ 0.6
SYNE1-227ENST00000489156 MYH1P12882 1939 aa18.79■□□□□ 0.6
SYNE1-227ENST00000489156 TCP10L2B9ZVM9 353 aa18.78■□□□□ 0.6
SYNE1-227ENST00000489156 USP5P45974 858 aa18.78■□□□□ 0.6
SYNE1-227ENST00000489156 ANGEL2Q5VTE6 544 aaKnown RBP18.78■□□□□ 0.6
SYNE1-227ENST00000489156 PNMA8AQ86V59 439 aaPredicted RBP18.78■□□□□ 0.6
SYNE1-227ENST00000489156 DDX4Q9NQI0 724 aaKnown RBP18.78■□□□□ 0.6
SYNE1-227ENST00000489156 GGA3Q9NZ52 723 aa18.78■□□□□ 0.6
SYNE1-227ENST00000489156 POTEIP0CG38 1075 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 POTEJP0CG39 1038 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 YY1P25490 414 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 NUCB2P80303 420 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 TOB2Q14106 344 aaPredicted RBP18.77■□□□□ 0.6
SYNE1-227ENST00000489156 GIMAP6Q6P9H5 292 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 MAPKAPK5Q8IW41 473 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 NCOA7Q8NI08 942 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 AGXT2Q9BYV1 514 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.77■□□□□ 0.6
SYNE1-227ENST00000489156 TCP10Q12799 353 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 IDI2Q9BXS1 227 aa18.77■□□□□ 0.6
SYNE1-227ENST00000489156 GPBP1L1Q9HC44 474 aaPredicted RBP18.77■□□□□ 0.6
SYNE1-227ENST00000489156 EPB41L4AQ9HCS5 686 aaPredicted RBP18.77■□□□□ 0.6
SYNE1-227ENST00000489156 FAM198AQ9UFP1 575 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms