RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 METTL16Q86W50 562 aaKnown RBP12.71□□□□□ -0.37
USP11-209ENST00000488848 KIAA0825Q8IV33 1275 aa12.71□□□□□ -0.37
USP11-209ENST00000488848 MB21D2Q8IYB1 491 aaPredicted RBP12.71□□□□□ -0.37
USP11-209ENST00000488848 SDR42E1Q8WUS8 393 aa12.71□□□□□ -0.37
USP11-209ENST00000488848 RNF41Q9H4P4 317 aaPredicted RBP12.71□□□□□ -0.37
USP11-209ENST00000488848 CNNM2Q9H8M5 875 aa12.71□□□□□ -0.37
USP11-209ENST00000488848 HDAC9Q9UKV0 1011 aa12.71□□□□□ -0.37
USP11-209ENST00000488848 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.71□□□□□ -0.37
USP11-209ENST00000488848 SIPA1L1O43166 1804 aa12.71□□□□□ -0.38
USP11-209ENST00000488848 ENTPD3O75355 529 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 RPS6KB1P23443 525 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 TDO2P48775 406 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 EXOSC10Q01780 885 aaKnown RBP12.7□□□□□ -0.38
USP11-209ENST00000488848 PPARAQ07869 468 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 AKNAD1Q5T1N1 836 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 C12orf60Q5U649 245 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 CDC42EP5Q6NZY7 148 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 TBC1D10CQ8IV04 446 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 TEX11Q8IYF3 940 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 OGFOD1Q8N543 542 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 IPO9Q96P70 1041 aaKnown RBP12.7□□□□□ -0.38
USP11-209ENST00000488848 NEK1Q96PY6 1258 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 EHD4Q9H223 541 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 CYP46A1Q9Y6A2 500 aa12.7□□□□□ -0.38
USP11-209ENST00000488848 GREB1LQ9C091 1923 aaPredicted RBP12.7□□□□□ -0.38
USP11-209ENST00000488848 BECN1Q14457 450 aa12.69□□□□□ -0.38
USP11-209ENST00000488848 CFAP100Q494V2 611 aa12.69□□□□□ -0.38
USP11-209ENST00000488848 SPDYE2Q495Y8 402 aa12.69□□□□□ -0.38
USP11-209ENST00000488848 BLOC1S2Q6QNY1 142 aa12.69□□□□□ -0.38
USP11-209ENST00000488848 ARHGAP27Q6ZUM4 889 aa12.69□□□□□ -0.38
USP11-209ENST00000488848 DHX32Q7L7V1 743 aaKnown RBP12.69□□□□□ -0.38
USP11-209ENST00000488848 L3MBTL3Q96JM7 780 aaPredicted RBP12.69□□□□□ -0.38
USP11-209ENST00000488848 JAKMIP1Q96N16 626 aaKnown RBP12.69□□□□□ -0.38
USP11-209ENST00000488848 TBC1D2Q9BYX2 928 aa12.69□□□□□ -0.38
USP11-209ENST00000488848 PLIN4Q96Q06 1357 aa12.69□□□□□ -0.38
USP11-209ENST00000488848 ZNF541Q9H0D2 1346 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 APPP05067 770 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 CASTP20810 708 aaKnown RBP12.68□□□□□ -0.38
USP11-209ENST00000488848 NEK4P51957 841 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 GABPAQ06546 454 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 ANKRD1Q15327 319 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 FAM83AQ86UY5 434 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 NCOA7Q8NI08 942 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 FBXW7Q969H0 707 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 KRT23Q9C075 422 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 OSBPL5Q9H0X9 879 aaPredicted RBP12.68□□□□□ -0.38
USP11-209ENST00000488848 DHX36Q9H2U1 1008 aaKnown RBP12.68□□□□□ -0.38
USP11-209ENST00000488848 NID2Q14112 1375 aa12.68□□□□□ -0.38
USP11-209ENST00000488848 SCN4AP35499 1836 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 USP17L12C9JPN9 530 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 USP17L21D6R901 530 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 CD2BP2O95400 341 aaKnown RBP12.67□□□□□ -0.38
USP11-209ENST00000488848 USP5P45974 858 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 SCNN1DP51172 638 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 RCAN1P53805 252 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 MYOZ2Q9NPC6 264 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 DDX4Q9NQI0 724 aaKnown RBP12.67□□□□□ -0.38
USP11-209ENST00000488848 USP40Q9NVE5 1235 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 FAM198AQ9UFP1 575 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 WDR90Q96KV7 1748 aa12.67□□□□□ -0.38
USP11-209ENST00000488848 NEDD4P46934 1319 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 F8W031 263 aaPredicted RBP12.66□□□□□ -0.38
USP11-209ENST00000488848 K7ELQ4 463 aaPredicted RBP12.66□□□□□ -0.38
USP11-209ENST00000488848 SLC3A2P08195 630 aaKnown RBP12.66□□□□□ -0.38
USP11-209ENST00000488848 MCM5P33992 734 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 NOVP48745 357 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 GMPSP49915 693 aaPredicted RBP12.66□□□□□ -0.38
USP11-209ENST00000488848 ANTXR2P58335 489 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 TRDNQ13061 729 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 CUL4AQ13619 759 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 DLGAP5Q15398 846 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 MFSD6Q6ZSS7 791 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 C16orf86Q6ZW13 317 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 SGMS1Q86VZ5 419 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 AMOTL1Q8IY63 956 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 TGFBRAP1Q8WUH2 860 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 TMEM87BQ96K49 555 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 PRMT6Q96LA8 375 aaPredicted RBP12.66□□□□□ -0.38
USP11-209ENST00000488848 UPF3BQ9BZI7 483 aaKnown RBP12.66□□□□□ -0.38
USP11-209ENST00000488848 ZNF287Q9HBT7 754 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 MCM9Q9NXL9 1143 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 GPRC5DQ9NZD1 345 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 ZBTB12Q9Y330 459 aaPredicted RBP12.66□□□□□ -0.38
USP11-209ENST00000488848 TACC3Q9Y6A5 838 aa12.66□□□□□ -0.38
USP11-209ENST00000488848 WNT10BO00744 389 aa12.65□□□□□ -0.38
USP11-209ENST00000488848 LIFRP42702 1097 aa12.65□□□□□ -0.38
USP11-209ENST00000488848 HAND2P61296 217 aa12.65□□□□□ -0.38
USP11-209ENST00000488848 MAP3K10Q02779 954 aa12.65□□□□□ -0.38
USP11-209ENST00000488848 PDE4BQ07343 736 aa12.65□□□□□ -0.38
USP11-209ENST00000488848 NFIAQ12857 509 aa12.65□□□□□ -0.38
USP11-209ENST00000488848 COL9A3Q14050 684 aaPredicted RBP12.65□□□□□ -0.38
USP11-209ENST00000488848 TOB2Q14106 344 aaPredicted RBP12.65□□□□□ -0.38
USP11-209ENST00000488848 RALYLQ86SE5 291 aaKnown RBP12.65□□□□□ -0.38
USP11-209ENST00000488848 TTC6Q86TZ1 520 aa12.65□□□□□ -0.38
USP11-209ENST00000488848 HSCBQ8IWL3 235 aa12.65□□□□□ -0.38
USP11-209ENST00000488848 PIAS4Q8N2W9 510 aaPredicted RBP12.65□□□□□ -0.38
USP11-209ENST00000488848 INTS4Q96HW7 963 aaKnown RBP12.65□□□□□ -0.38
USP11-209ENST00000488848 SH2B1Q9NRF2 756 aaPredicted RBP12.65□□□□□ -0.38
USP11-209ENST00000488848 PDRG1Q9NUG6 133 aa12.65□□□□□ -0.38
USP11-209ENST00000488848 TCP11L1Q9NUJ3 509 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms