RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ELNP15502 786 aa19.24■□□□□ 0.67
MCF2L-228ENST00000487354 PTPRAP18433 802 aa19.24■□□□□ 0.67
MCF2L-228ENST00000487354 UBXN2AP68543 259 aa19.24■□□□□ 0.67
MCF2L-228ENST00000487354 SCYL3Q8IZE3 742 aa19.24■□□□□ 0.67
MCF2L-228ENST00000487354 USP40Q9NVE5 1235 aa19.24■□□□□ 0.67
MCF2L-228ENST00000487354 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.24■□□□□ 0.67
MCF2L-228ENST00000487354 AFG3L2Q9Y4W6 797 aa19.24■□□□□ 0.67
MCF2L-228ENST00000487354 GAKO14976 1311 aa19.24■□□□□ 0.67
MCF2L-228ENST00000487354 PTPRCP08575 1304 aa19.24■□□□□ 0.67
MCF2L-228ENST00000487354 INHAP05111 366 aa19.23■□□□□ 0.67
MCF2L-228ENST00000487354 FLT3LGP49771 235 aa19.23■□□□□ 0.67
MCF2L-228ENST00000487354 MAP3K10Q02779 954 aa19.23■□□□□ 0.67
MCF2L-228ENST00000487354 IDI2Q9BXS1 227 aa19.23■□□□□ 0.67
MCF2L-228ENST00000487354 SIPA1L1O43166 1804 aa19.23■□□□□ 0.67
MCF2L-228ENST00000487354 DDX60LQ5H9U9 1706 aaKnown RBP19.22■□□□□ 0.67
MCF2L-228ENST00000487354 ADCY3O60266 1144 aa19.22■□□□□ 0.67
MCF2L-228ENST00000487354 RGS3P49796 1198 aa19.22■□□□□ 0.67
MCF2L-228ENST00000487354 PAK6Q9NQU5 681 aaPredicted RBP19.22■□□□□ 0.67
MCF2L-228ENST00000487354 BIN2Q9UBW5 565 aaPredicted RBP19.22■□□□□ 0.67
MCF2L-228ENST00000487354 SLC45A1Q9Y2W3 748 aa19.22■□□□□ 0.67
MCF2L-228ENST00000487354 ZHX2Q9Y6X8 837 aa19.22■□□□□ 0.67
MCF2L-228ENST00000487354 ZBTB22O15209 634 aa19.21■□□□□ 0.67
MCF2L-228ENST00000487354 LDHBP07195 334 aaKnown RBP19.21■□□□□ 0.67
MCF2L-228ENST00000487354 PHKA1P46020 1223 aa19.21■□□□□ 0.67
MCF2L-228ENST00000487354 IRF5Q13568 498 aa19.21■□□□□ 0.67
MCF2L-228ENST00000487354 PXYLP1Q8TE99 480 aa19.21■□□□□ 0.67
MCF2L-228ENST00000487354 SSH1Q8WYL5 1049 aa19.21■□□□□ 0.67
MCF2L-228ENST00000487354 CRISPLD2Q9H0B8 497 aa19.21■□□□□ 0.67
MCF2L-228ENST00000487354 DDX4Q9NQI0 724 aaKnown RBP19.21■□□□□ 0.67
MCF2L-228ENST00000487354 A0A0C4DFX4 3053 aa19.21■□□□□ 0.67
MCF2L-228ENST00000487354 DDTLA6NHG4 134 aaPredicted RBP19.2■□□□□ 0.66
MCF2L-228ENST00000487354 ENTPD3O75355 529 aa19.2■□□□□ 0.66
MCF2L-228ENST00000487354 ATP2B3Q16720 1220 aa19.2■□□□□ 0.66
MCF2L-228ENST00000487354 FASTKD5Q7L8L6 764 aaKnown RBP19.2■□□□□ 0.66
MCF2L-228ENST00000487354 CCDC84Q86UT8 332 aaPredicted RBP19.2■□□□□ 0.66
MCF2L-228ENST00000487354 NR2E3Q9Y5X4 410 aa19.2■□□□□ 0.66
MCF2L-228ENST00000487354 A0A1W2PPC1 479 aa19.19■□□□□ 0.66
MCF2L-228ENST00000487354 GADL1Q6ZQY3 521 aa19.19■□□□□ 0.66
MCF2L-228ENST00000487354 LRCH3Q96II8 777 aa19.19■□□□□ 0.66
MCF2L-228ENST00000487354 CDK5RAP2Q96SN8 1893 aa19.18■□□□□ 0.66
MCF2L-228ENST00000487354 CIAO1O76071 339 aa19.18■□□□□ 0.66
MCF2L-228ENST00000487354 ADORA1P30542 326 aa19.18■□□□□ 0.66
MCF2L-228ENST00000487354 ZEB1P37275 1124 aaPredicted RBP19.18■□□□□ 0.66
MCF2L-228ENST00000487354 TREML2Q5T2D2 321 aa19.18■□□□□ 0.66
MCF2L-228ENST00000487354 DIS3LQ8TF46 1054 aaKnown RBP19.18■□□□□ 0.66
MCF2L-228ENST00000487354 DEFB118Q96PH6 123 aa19.18■□□□□ 0.66
MCF2L-228ENST00000487354 SIL1Q9H173 461 aa19.18■□□□□ 0.66
MCF2L-228ENST00000487354 TNPO2O14787 897 aaKnown RBP19.17■□□□□ 0.66
MCF2L-228ENST00000487354 SEMA3EO15041 775 aa19.17■□□□□ 0.66
MCF2L-228ENST00000487354 ZNF384Q8TF68 577 aa19.17■□□□□ 0.66
MCF2L-228ENST00000487354 PICK1Q9NRD5 415 aa19.17■□□□□ 0.66
MCF2L-228ENST00000487354 DENND2AQ9ULE3 1009 aa19.17■□□□□ 0.66
MCF2L-228ENST00000487354 TRIM75PA6NK02 468 aa19.16■□□□□ 0.66
MCF2L-228ENST00000487354 MNX1P50219 401 aaPredicted RBP19.16■□□□□ 0.66
MCF2L-228ENST00000487354 RASGRF1Q13972 1273 aa19.16■□□□□ 0.66
MCF2L-228ENST00000487354 STAP2Q9UGK3 403 aa19.16■□□□□ 0.66
MCF2L-228ENST00000487354 FBXO3Q9UK99 471 aa19.16■□□□□ 0.66
MCF2L-228ENST00000487354 AGTPBP1Q9UPW5 1226 aa19.16■□□□□ 0.66
MCF2L-228ENST00000487354 CUL9Q8IWT3 2517 aa19.16■□□□□ 0.66
MCF2L-228ENST00000487354 EVI5O60447 810 aa19.15■□□□□ 0.66
MCF2L-228ENST00000487354 CTNND1O60716 968 aaKnown RBP19.15■□□□□ 0.66
MCF2L-228ENST00000487354 RHBDL3P58872 404 aa19.15■□□□□ 0.66
MCF2L-228ENST00000487354 CCDC102BQ68D86 513 aa19.15■□□□□ 0.66
MCF2L-228ENST00000487354 ANKRD13CQ8N6S4 541 aa19.15■□□□□ 0.66
MCF2L-228ENST00000487354 FAM163AQ96GL9 167 aaPredicted RBP19.15■□□□□ 0.66
MCF2L-228ENST00000487354 PAWRQ96IZ0 340 aaKnown RBP19.15■□□□□ 0.66
MCF2L-228ENST00000487354 PA2G4Q9UQ80 394 aaKnown RBP19.15■□□□□ 0.66
MCF2L-228ENST00000487354 FRMPD3Q5JV73 1810 aa19.15■□□□□ 0.66
MCF2L-228ENST00000487354 FOCADQ5VW36 1801 aa19.15■□□□□ 0.66
MCF2L-228ENST00000487354 PDS5AQ29RF7 1337 aaKnown RBP19.15■□□□□ 0.66
MCF2L-228ENST00000487354 FAM110CQ1W6H9 321 aa19.14■□□□□ 0.65
MCF2L-228ENST00000487354 FAM9BQ8IZU0 186 aa19.14■□□□□ 0.65
MCF2L-228ENST00000487354 SMCR8Q8TEV9 937 aaPredicted RBP19.14■□□□□ 0.65
MCF2L-228ENST00000487354 GDF15Q99988 308 aa19.14■□□□□ 0.65
MCF2L-228ENST00000487354 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.14■□□□□ 0.65
MCF2L-228ENST00000487354 GNL3LQ9NVN8 582 aaKnown RBP19.14■□□□□ 0.65
MCF2L-228ENST00000487354 COL2A1P02458 1487 aaPredicted RBP19.14■□□□□ 0.65
MCF2L-228ENST00000487354 FAM196BA6NMK8 535 aa19.13■□□□□ 0.65
MCF2L-228ENST00000487354 DLL1O00548 723 aa19.13■□□□□ 0.65
MCF2L-228ENST00000487354 TFRCP02786 760 aaKnown RBP19.13■□□□□ 0.65
MCF2L-228ENST00000487354 BTDP43251 543 aa19.13■□□□□ 0.65
MCF2L-228ENST00000487354 RRP1BQ14684 758 aaKnown RBP19.13■□□□□ 0.65
MCF2L-228ENST00000487354 CEP126Q9P2H0 1117 aa19.13■□□□□ 0.65
MCF2L-228ENST00000487354 LRRFIP2Q9Y608 721 aaKnown RBP19.13■□□□□ 0.65
MCF2L-228ENST00000487354 MROH7-TTC4A0A0A0MT08 1334 aa19.13■□□□□ 0.65
MCF2L-228ENST00000487354 UNC80Q8N2C7 3258 aa19.12■□□□□ 0.65
MCF2L-228ENST00000487354 MAST2Q6P0Q8 1798 aa19.12■□□□□ 0.65
MCF2L-228ENST00000487354 CAPN2P17655 700 aa19.12■□□□□ 0.65
MCF2L-228ENST00000487354 IL15P40933 162 aaPredicted RBP19.12■□□□□ 0.65
MCF2L-228ENST00000487354 TRIM32Q13049 653 aa19.12■□□□□ 0.65
MCF2L-228ENST00000487354 PICALMQ13492 652 aa19.12■□□□□ 0.65
MCF2L-228ENST00000487354 ZSCAN29Q8IWY8 852 aaPredicted RBP19.12■□□□□ 0.65
MCF2L-228ENST00000487354 SLC17A8Q8NDX2 589 aa19.12■□□□□ 0.65
MCF2L-228ENST00000487354 GJD2Q9UKL4 321 aa19.12■□□□□ 0.65
MCF2L-228ENST00000487354 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.12■□□□□ 0.65
MCF2L-228ENST00000487354 ANP32CO43423 234 aa19.11■□□□□ 0.65
MCF2L-228ENST00000487354 TBC1D12O60347 775 aa19.11■□□□□ 0.65
MCF2L-228ENST00000487354 DZIP1Q86YF9 867 aaKnown RBP19.11■□□□□ 0.65
MCF2L-228ENST00000487354 ZGPATQ8N5A5 531 aaKnown RBP19.11■□□□□ 0.65
MCF2L-228ENST00000487354 PROCA1Q8NCQ7 364 aaPredicted RBP19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms