RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 PCDHA5Q9Y5H7 936 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 ADGRG1Q9Y653 693 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 GOLGA6L7A0A1B0GV03 622 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 ARHGAP25P42331 645 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 ZNF827Q17R98 1081 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 CWF19L2Q2TBE0 894 aaKnown RBP7.07□□□□□ -1.28
VPS13D-209ENST00000487188 TSGA10IPQ3SY00 556 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 NBPF6Q5VWK0 638 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 CNPY4Q8N129 248 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 ACRBPQ8NEB7 543 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 NBPF4Q96M43 638 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 KAT14Q9H8E8 782 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 NPHP4O75161 1426 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-209ENST00000487188 CLNS1AP54105 237 aaKnown RBP7.07□□□□□ -1.28
VPS13D-209ENST00000487188 STX17P56962 302 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 TTC39AQ5SRH9 613 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 ARHGEF25Q86VW2 580 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 ANKRD18AQ8IVF6 992 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 KCNH3Q9ULD8 1083 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 TUBGCP6Q96RT7 1819 aa7.07□□□□□ -1.28
VPS13D-209ENST00000487188 HSF2BPO75031 334 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 ZMYND10O75800 440 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 CTDNEP1O95476 244 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 EZRP15311 586 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 PDIA3P30101 505 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 GGCXP38435 758 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 SAFBQ15424 915 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 CEP85LQ5SZL2 805 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 SND1Q7KZF4 910 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 RIC3Q7Z5B4 369 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 MSL3Q8N5Y2 521 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 NOA1Q8NC60 698 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 VIPAS39Q9H9C1 493 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 ODF2LQ9ULJ1 636 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 A0A1B0GUA9 196 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 GOLIM4O00461 696 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 WASHC4Q2M389 1173 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 TMEM139Q8IV31 216 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 MLKLQ8NB16 471 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 SCLT1Q96NL6 688 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 PANX2Q96RD6 677 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 EYA1Q99502 592 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 SLF1Q9BQI6 1058 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 ALG1Q9BT22 464 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 HPCAL4Q9UM19 191 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 MROH7-TTC4A0A0A0MT08 1334 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 CHD2O14647 1828 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 XIRP1Q702N8 1843 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 GRM8O00222 908 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 CHUKO15111 745 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 TFRCP02786 760 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 SSBP05455 408 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 GBP2P32456 591 aaPredicted RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 ELF1P32519 619 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 HAND2P61296 217 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 SARNPP82979 210 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 ATP2B2Q01814 1243 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 RBL2Q08999 1139 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 GSPT2Q8IYD1 628 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 NGDNQ8NEJ9 315 aaKnown RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 KLHDC4Q8TBB5 520 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 KAT2BQ92831 832 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 ZNF274Q96GC6 653 aaPredicted RBP7.06□□□□□ -1.28
VPS13D-209ENST00000487188 SLC24A3Q9HC58 644 aa7.06□□□□□ -1.28
VPS13D-209ENST00000487188 ALKQ9UM73 1620 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 IRAK1P51617 712 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 GSCP56915 257 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-209ENST00000487188 NAA25Q14CX7 972 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 SLC39A14Q15043 492 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 PLEKHO1Q53GL0 409 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-209ENST00000487188 RAD9BQ6WBX8 426 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 NFXL1Q6ZNB6 911 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 TMTC1Q8IUR5 882 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 FMNL3Q8IVF7 1028 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 ATRIPQ8WXE1 791 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 SUCLG2Q96I99 432 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 CCDC114Q96M63 670 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 CLIC6Q96NY7 704 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS13D-209ENST00000487188 DBF4Q9UBU7 674 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-209ENST00000487188 TUBE1Q9UJT0 475 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 CDHR2Q9BYE9 1310 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 GOLGA8KD6RF30 607 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 E7EWF7 191 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 N4BP3O15049 544 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 CDKL5O76039 1030 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 SASH1O94885 1247 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 SCP2P22307 547 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 POSTNQ15063 836 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 SPECC1Q5M775 1068 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 COG1Q8WTW3 980 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 CTAGE1Q96RT6 745 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 SAMSN1Q9NSI8 373 aaKnown RBP7.05□□□□□ -1.28
VPS13D-209ENST00000487188 WWC3Q9ULE0 1092 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 MYO1FO00160 1098 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 USP14P54578 494 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 CCDC181Q5TID7 509 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 STOX1Q6ZVD7 989 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 ILDR1Q86SU0 546 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-209ENST00000487188 TACO1Q9BSH4 297 aaKnown RBP7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms