RNA–Protein interactions for RNA: ENST00000478279.5

APTX-222, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 684 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-222	ENST00000478279	UTY	O14607	1347 aa		13.31	□□□□□ -0.28
APTX-222	ENST00000478279	PHF20L1	A8MW92	1017 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	FGFR2	P21802	821 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	ZEB1	P37275	1124 aa	Predicted RBP	13.3	□□□□□ -0.28
APTX-222	ENST00000478279	PUM3	Q15397	648 aa	Known RBP	13.3	□□□□□ -0.28
APTX-222	ENST00000478279	DIXDC1	Q155Q3	683 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	LRIT3	Q3SXY7	679 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	WDR63	Q8IWG1	891 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	SCYL3	Q8IZE3	742 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	ANKLE1	Q8NAG6	615 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	COA7	Q96BR5	231 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	PICK1	Q9NRD5	415 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	USP40	Q9NVE5	1235 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	STXBP5L	Q9Y2K9	1186 aa		13.3	□□□□□ -0.28
APTX-222	ENST00000478279	PTPRA	P18433	802 aa		13.29	□□□□□ -0.28
APTX-222	ENST00000478279		Q7L0L9	218 aa		13.29	□□□□□ -0.28
APTX-222	ENST00000478279	ZFPM1	Q8IX07	1006 aa		13.29	□□□□□ -0.28
APTX-222	ENST00000478279	C7orf61	Q8IZ16	206 aa		13.29	□□□□□ -0.28
APTX-222	ENST00000478279	ANKRD44	Q8N8A2	993 aa		13.29	□□□□□ -0.28
APTX-222	ENST00000478279	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.29	□□□□□ -0.28
APTX-222	ENST00000478279	DIS3L	Q8TF46	1054 aa	Known RBP	13.29	□□□□□ -0.28
APTX-222	ENST00000478279	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.29	□□□□□ -0.28
APTX-222	ENST00000478279	TAOK2	Q9UL54	1235 aa		13.29	□□□□□ -0.28
APTX-222	ENST00000478279	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.29	□□□□□ -0.28
APTX-222	ENST00000478279	ATRNL1	Q5VV63	1379 aa		13.29	□□□□□ -0.28
APTX-222	ENST00000478279	MAP3K10	Q02779	954 aa		13.28	□□□□□ -0.28
APTX-222	ENST00000478279	KLHDC4	Q8TBB5	520 aa		13.28	□□□□□ -0.28
APTX-222	ENST00000478279	NBPF3	Q9H094	633 aa		13.28	□□□□□ -0.28
APTX-222	ENST00000478279	MTMR10	Q9NXD2	777 aa		13.28	□□□□□ -0.28
APTX-222	ENST00000478279	PTPRF	P10586	1907 aa		13.28	□□□□□ -0.28
APTX-222	ENST00000478279	MYH13	Q9UKX3	1938 aa		13.28	□□□□□ -0.28
APTX-222	ENST00000478279	LAMA2	P24043	3122 aa	Known RBP	13.28	□□□□□ -0.28
APTX-222	ENST00000478279	VCAN	P13611	3396 aa		13.27	□□□□□ -0.28
APTX-222	ENST00000478279	LDHB	P07195	334 aa	Known RBP	13.27	□□□□□ -0.29
APTX-222	ENST00000478279	SLC5A1	P13866	664 aa		13.27	□□□□□ -0.29
APTX-222	ENST00000478279	PRDX5	P30044	214 aa		13.27	□□□□□ -0.29
APTX-222	ENST00000478279	CCDC184	Q52MB2	194 aa		13.27	□□□□□ -0.29
APTX-222	ENST00000478279	LPIN2	Q92539	896 aa		13.27	□□□□□ -0.29
APTX-222	ENST00000478279	LRRFIP2	Q9Y608	721 aa	Known RBP	13.27	□□□□□ -0.29
APTX-222	ENST00000478279	CTNND1	O60716	968 aa	Known RBP	13.26	□□□□□ -0.29
APTX-222	ENST00000478279	ENTPD3	O75355	529 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	HMGCR	P04035	888 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	MAGEA10	P43363	369 aa	Predicted RBP	13.26	□□□□□ -0.29
APTX-222	ENST00000478279	RGS3	P49796	1198 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	FAM110C	Q1W6H9	321 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	TDH	Q8IZJ6	230 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	ANKRD13C	Q8N6S4	541 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	DOCK2	Q92608	1830 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	IDI2	Q9BXS1	227 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	HMX1	Q9NP08	348 aa	Predicted RBP	13.26	□□□□□ -0.29
APTX-222	ENST00000478279	PNMA3	Q9UL41	463 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	AGTPBP1	Q9UPW5	1226 aa		13.26	□□□□□ -0.29
APTX-222	ENST00000478279	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.25	□□□□□ -0.29
APTX-222	ENST00000478279	RPTOR	Q8N122	1335 aa		13.25	□□□□□ -0.29
APTX-222	ENST00000478279	TRIM75P	A6NK02	468 aa		13.25	□□□□□ -0.29
APTX-222	ENST00000478279	SYN1	P17600	705 aa		13.25	□□□□□ -0.29
APTX-222	ENST00000478279	SH3BP5L	Q7L8J4	393 aa		13.25	□□□□□ -0.29
APTX-222	ENST00000478279	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.25	□□□□□ -0.29
APTX-222	ENST00000478279	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.25	□□□□□ -0.29
APTX-222	ENST00000478279	C11orf49	Q9H6J7	331 aa		13.25	□□□□□ -0.29
APTX-222	ENST00000478279	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.25	□□□□□ -0.29
APTX-222	ENST00000478279	SALL2	Q9Y467	1007 aa	Predicted RBP	13.25	□□□□□ -0.29
APTX-222	ENST00000478279	PHIP	Q8WWQ0	1821 aa		13.25	□□□□□ -0.29
APTX-222	ENST00000478279	SALL1	Q9NSC2	1324 aa		13.24	□□□□□ -0.29
APTX-222	ENST00000478279	EYA2	O00167	538 aa		13.24	□□□□□ -0.29
APTX-222	ENST00000478279	TREML2	Q5T2D2	321 aa		13.24	□□□□□ -0.29
APTX-222	ENST00000478279	UBE2O	Q9C0C9	1292 aa	Known RBP	13.24	□□□□□ -0.29
APTX-222	ENST00000478279	GNL3L	Q9NVN8	582 aa	Known RBP	13.24	□□□□□ -0.29
APTX-222	ENST00000478279	GJD2	Q9UKL4	321 aa		13.24	□□□□□ -0.29
APTX-222	ENST00000478279	OGDHL	Q9ULD0	1010 aa		13.24	□□□□□ -0.29
APTX-222	ENST00000478279	DOCK1	Q14185	1865 aa		13.23	□□□□□ -0.29
APTX-222	ENST00000478279	DDTL	A6NHG4	134 aa	Predicted RBP	13.23	□□□□□ -0.29
APTX-222	ENST00000478279	SLURP2	P0DP57	97 aa		13.23	□□□□□ -0.29
APTX-222	ENST00000478279	GCLC	P48506	637 aa	Predicted RBP	13.23	□□□□□ -0.29
APTX-222	ENST00000478279	TRIM32	Q13049	653 aa		13.23	□□□□□ -0.29
APTX-222	ENST00000478279	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.23	□□□□□ -0.29
APTX-222	ENST00000478279	DENND2A	Q9ULE3	1009 aa		13.23	□□□□□ -0.29
APTX-222	ENST00000478279	MYH2	Q9UKX2	1941 aa		13.23	□□□□□ -0.29
APTX-222	ENST00000478279	DNAH12	Q6ZR08	3092 aa		13.23	□□□□□ -0.29
APTX-222	ENST00000478279	RFX7	Q2KHR2	1363 aa		13.22	□□□□□ -0.29
APTX-222	ENST00000478279	GAK	O14976	1311 aa		13.22	□□□□□ -0.29
APTX-222	ENST00000478279	SEMA3E	O15041	775 aa		13.22	□□□□□ -0.29
APTX-222	ENST00000478279	RFX5	P48382	616 aa	Predicted RBP	13.22	□□□□□ -0.29
APTX-222	ENST00000478279	ATG9A	Q7Z3C6	839 aa		13.22	□□□□□ -0.29
APTX-222	ENST00000478279	CCDC84	Q86UT8	332 aa	Predicted RBP	13.22	□□□□□ -0.29
APTX-222	ENST00000478279	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.22	□□□□□ -0.29
APTX-222	ENST00000478279	DDX60L	Q5H9U9	1706 aa	Known RBP	13.22	□□□□□ -0.29
APTX-222	ENST00000478279	ZBTB22	O15209	634 aa		13.21	□□□□□ -0.29
APTX-222	ENST00000478279	TBC1D12	O60347	775 aa		13.21	□□□□□ -0.29
APTX-222	ENST00000478279	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.21	□□□□□ -0.29
APTX-222	ENST00000478279	ATP2B3	Q16720	1220 aa		13.21	□□□□□ -0.29
APTX-222	ENST00000478279	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	13.21	□□□□□ -0.29
APTX-222	ENST00000478279	ZGPAT	Q8N5A5	531 aa	Known RBP	13.21	□□□□□ -0.29
APTX-222	ENST00000478279	FAM163A	Q96GL9	167 aa	Predicted RBP	13.21	□□□□□ -0.29
APTX-222	ENST00000478279	USP44	Q9H0E7	712 aa		13.21	□□□□□ -0.29
APTX-222	ENST00000478279	DDX4	Q9NQI0	724 aa	Known RBP	13.21	□□□□□ -0.29
APTX-222	ENST00000478279	SPP2	Q13103	211 aa		13.2	□□□□□ -0.3
APTX-222	ENST00000478279	PICALM	Q13492	652 aa		13.2	□□□□□ -0.3
APTX-222	ENST00000478279	MAP3K21	Q5TCX8	1036 aa		13.2	□□□□□ -0.3
APTX-222	ENST00000478279	SLF2	Q8IX21	1173 aa		13.2	□□□□□ -0.3

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