RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 FAM87AP0C7U9 286 aa8.38□□□□□ -1.07
VPS50-213ENST00000477572 ZC3H12AQ5D1E8 599 aaKnown RBP8.38□□□□□ -1.07
VPS50-213ENST00000477572 ISL2Q96A47 359 aa8.38□□□□□ -1.07
VPS50-213ENST00000477572 KRTAP4-8Q9BYQ9 185 aa8.38□□□□□ -1.07
VPS50-213ENST00000477572 ZC3H7BQ9UGR2 993 aaKnown RBP8.38□□□□□ -1.07
VPS50-213ENST00000477572 ANGEL1Q9UNK9 670 aaKnown RBP8.38□□□□□ -1.07
VPS50-213ENST00000477572 GIPC1O14908 333 aa8.37□□□□□ -1.07
VPS50-213ENST00000477572 IRAK1P51617 712 aa8.37□□□□□ -1.07
VPS50-213ENST00000477572 HNRNPUQ00839 825 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS50-213ENST00000477572 CYP27A1Q02318 531 aa8.37□□□□□ -1.07
VPS50-213ENST00000477572 CPSF6Q16630 551 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS50-213ENST00000477572 PPM1JQ5JR12 505 aa8.37□□□□□ -1.07
VPS50-213ENST00000477572 OGFOD3Q6PK18 319 aa8.37□□□□□ -1.07
VPS50-213ENST00000477572 SND1Q7KZF4 910 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS50-213ENST00000477572 FAM8A1Q9UBU6 413 aa8.37□□□□□ -1.07
VPS50-213ENST00000477572 PPM1HQ9ULR3 514 aa8.37□□□□□ -1.07
VPS50-213ENST00000477572 TTF2Q9UNY4 1162 aaKnown RBP8.37□□□□□ -1.07
VPS50-213ENST00000477572 LEFTY1O75610 366 aa8.36□□□□□ -1.07
VPS50-213ENST00000477572 LLGL2Q6P1M3 1020 aa8.36□□□□□ -1.07
VPS50-213ENST00000477572 C12orf40Q86WS4 652 aa8.36□□□□□ -1.07
VPS50-213ENST00000477572 FAM181AQ8N9Y4 354 aa8.36□□□□□ -1.07
VPS50-213ENST00000477572 DUSP9Q99956 384 aaKnown RBP8.36□□□□□ -1.07
VPS50-213ENST00000477572 PICK1Q9NRD5 415 aa8.36□□□□□ -1.07
VPS50-213ENST00000477572 CCDC39Q9UFE4 941 aa8.36□□□□□ -1.07
VPS50-213ENST00000477572 SAMM50Q9Y512 469 aa8.36□□□□□ -1.07
VPS50-213ENST00000477572 PCNX4Q63HM2 1172 aa8.35□□□□□ -1.07
VPS50-213ENST00000477572 MCTP1Q6DN14 999 aa8.35□□□□□ -1.07
VPS50-213ENST00000477572 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS50-213ENST00000477572 PCDHA4Q9UN74 947 aa8.35□□□□□ -1.07
VPS50-213ENST00000477572 PRPF40AO75400 957 aaKnown RBP8.34□□□□□ -1.07
VPS50-213ENST00000477572 EIF4BP23588 611 aaKnown RBP8.34□□□□□ -1.07
VPS50-213ENST00000477572 GNA15P30679 374 aa8.34□□□□□ -1.07
VPS50-213ENST00000477572 ERVK-24P63145 666 aa8.34□□□□□ -1.07
VPS50-213ENST00000477572 PTPN11Q06124 597 aaPredicted RBP8.34□□□□□ -1.07
VPS50-213ENST00000477572 NFXL1Q6ZNB6 911 aa8.34□□□□□ -1.07
VPS50-213ENST00000477572 UBE3DQ7Z6J8 389 aa8.34□□□□□ -1.07
VPS50-213ENST00000477572 ABI1Q8IZP0 508 aa8.34□□□□□ -1.07
VPS50-213ENST00000477572 RNF214Q8ND24 703 aa8.34□□□□□ -1.07
VPS50-213ENST00000477572 BSDC1Q9NW68 430 aaPredicted RBP8.34□□□□□ -1.07
VPS50-213ENST00000477572 PCOLCE2Q9UKZ9 415 aa8.34□□□□□ -1.07
VPS50-213ENST00000477572 CYP27C1Q4G0S4 372 aa8.33□□□□□ -1.08
VPS50-213ENST00000477572 EAPPQ56P03 285 aaPredicted RBP8.33□□□□□ -1.08
VPS50-213ENST00000477572 TP53INP2Q8IXH6 220 aa8.33□□□□□ -1.08
VPS50-213ENST00000477572 TOP6BLQ8N6T0 577 aa8.33□□□□□ -1.08
VPS50-213ENST00000477572 CACNA2D2Q9NY47 1150 aa8.33□□□□□ -1.08
VPS50-213ENST00000477572 U3KQE9 123 aa8.33□□□□□ -1.08
VPS50-213ENST00000477572 TRIM37O94972 964 aa8.32□□□□□ -1.08
VPS50-213ENST00000477572 LRRC14Q15048 493 aa8.32□□□□□ -1.08
VPS50-213ENST00000477572 MAP3K11Q16584 847 aa8.32□□□□□ -1.08
VPS50-213ENST00000477572 FLCNQ8NFG4 579 aa8.32□□□□□ -1.08
VPS50-213ENST00000477572 PRNPP04156 253 aa8.31□□□□□ -1.08
VPS50-213ENST00000477572 TAL1P17542 331 aaPredicted RBP8.31□□□□□ -1.08
VPS50-213ENST00000477572 INPP5AQ14642 412 aa8.31□□□□□ -1.08
VPS50-213ENST00000477572 VSIG10LQ86VR7 867 aa8.31□□□□□ -1.08
VPS50-213ENST00000477572 PLD6Q8N2A8 252 aaKnown RBP8.31□□□□□ -1.08
VPS50-213ENST00000477572 DUSP23Q9BVJ7 150 aa8.31□□□□□ -1.08
VPS50-213ENST00000477572 NTF4P34130 210 aa8.3□□□□□ -1.08
VPS50-213ENST00000477572 CDK8P49336 464 aa8.3□□□□□ -1.08
VPS50-213ENST00000477572 BNIP3Q12983 259 aa8.3□□□□□ -1.08
VPS50-213ENST00000477572 CCDC85BQ15834 202 aaPredicted RBP8.3□□□□□ -1.08
VPS50-213ENST00000477572 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.3□□□□□ -1.08
VPS50-213ENST00000477572 ZNF574Q6ZN55 896 aaPredicted RBP8.3□□□□□ -1.08
VPS50-213ENST00000477572 ELMO3Q96BJ8 720 aa8.3□□□□□ -1.08
VPS50-213ENST00000477572 FAM161BQ96MY7 647 aa8.3□□□□□ -1.08
VPS50-213ENST00000477572 FRMD6Q96NE9 622 aa8.3□□□□□ -1.08
VPS50-213ENST00000477572 CYP8B1Q9UNU6 501 aa8.3□□□□□ -1.08
VPS50-213ENST00000477572 AK5Q9Y6K8 562 aa8.3□□□□□ -1.08
VPS50-213ENST00000477572 COL17A1Q9UMD9 1497 aaPredicted RBP8.3□□□□□ -1.08
VPS50-213ENST00000477572 PRAMEF27A3QJZ7 478 aa8.29□□□□□ -1.08
VPS50-213ENST00000477572 MEI1Q5TIA1 1274 aa8.29□□□□□ -1.08
VPS50-213ENST00000477572 TTBK2Q6IQ55 1244 aa8.29□□□□□ -1.08
VPS50-213ENST00000477572 LRFN4Q6PJG9 635 aa8.29□□□□□ -1.08
VPS50-213ENST00000477572 SV2BQ7L1I2 683 aa8.29□□□□□ -1.08
VPS50-213ENST00000477572 PARP2Q9UGN5 583 aa8.29□□□□□ -1.08
VPS50-213ENST00000477572 ADGRE2Q9UHX3 823 aa8.29□□□□□ -1.08
VPS50-213ENST00000477572 ZBTB37Q5TC79 503 aa8.28□□□□□ -1.08
VPS50-213ENST00000477572 ARHGAP27Q6ZUM4 889 aa8.28□□□□□ -1.08
VPS50-213ENST00000477572 NPAS4Q8IUM7 802 aa8.28□□□□□ -1.08
VPS50-213ENST00000477572 ANKRD24Q8TF21 1146 aa8.28□□□□□ -1.08
VPS50-213ENST00000477572 PLPPR2Q96GM1 343 aa8.28□□□□□ -1.08
VPS50-213ENST00000477572 FBXL18Q96ME1 805 aa8.28□□□□□ -1.08
VPS50-213ENST00000477572 PAK6Q9NQU5 681 aaPredicted RBP8.28□□□□□ -1.08
VPS50-213ENST00000477572 PCDHB5Q9Y5E4 795 aa8.28□□□□□ -1.08
VPS50-213ENST00000477572 ITIH2P19823 946 aa8.27□□□□□ -1.09
VPS50-213ENST00000477572 CD96P40200 585 aa8.27□□□□□ -1.09
VPS50-213ENST00000477572 TAGLNQ01995 201 aaKnown RBP8.27□□□□□ -1.09
VPS50-213ENST00000477572 RING1Q06587 406 aa8.27□□□□□ -1.09
VPS50-213ENST00000477572 DNAJC14Q6Y2X3 702 aaPredicted RBP8.27□□□□□ -1.09
VPS50-213ENST00000477572 CDC37L1Q7L3B6 337 aa8.27□□□□□ -1.09
VPS50-213ENST00000477572 SPRED2Q7Z698 418 aa8.27□□□□□ -1.09
VPS50-213ENST00000477572 BCL7CQ8WUZ0 217 aaPredicted RBP8.27□□□□□ -1.09
VPS50-213ENST00000477572 GAL3ST3Q96A11 431 aa8.27□□□□□ -1.09
VPS50-213ENST00000477572 GZF1Q9H116 711 aaPredicted RBP8.27□□□□□ -1.09
VPS50-213ENST00000477572 PSMD2Q13200 908 aa8.26□□□□□ -1.09
VPS50-213ENST00000477572 SEPT6Q14141 434 aa8.26□□□□□ -1.09
VPS50-213ENST00000477572 COL19A1Q14993 1142 aa8.26□□□□□ -1.09
VPS50-213ENST00000477572 NETO1Q8TDF5 533 aa8.26□□□□□ -1.09
VPS50-213ENST00000477572 SLC5A6Q9Y289 635 aa8.26□□□□□ -1.09
VPS50-213ENST00000477572 FANCGO15287 622 aa8.25□□□□□ -1.09
VPS50-213ENST00000477572 WIPI1Q5MNZ9 446 aaPredicted RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms