RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 RHBDL3P58872 404 aa14.78□□□□□ -0.04
SYNE1-223ENST00000476519 CRHR2Q13324 411 aa14.78□□□□□ -0.04
SYNE1-223ENST00000476519 NOL9Q5SY16 702 aaKnown RBP14.78□□□□□ -0.04
SYNE1-223ENST00000476519 ZSCAN29Q8IWY8 852 aaPredicted RBP14.78□□□□□ -0.04
SYNE1-223ENST00000476519 EAF2Q96CJ1 260 aaPredicted RBP14.78□□□□□ -0.04
SYNE1-223ENST00000476519 ZFYVE28Q9HCC9 887 aa14.78□□□□□ -0.04
SYNE1-223ENST00000476519 ZBTB40Q9NUA8 1239 aa14.78□□□□□ -0.04
SYNE1-223ENST00000476519 TBC1D12O60347 775 aa14.77□□□□□ -0.05
SYNE1-223ENST00000476519 HMMRO75330 724 aa14.77□□□□□ -0.05
SYNE1-223ENST00000476519 BAG3O95817 575 aa14.77□□□□□ -0.05
SYNE1-223ENST00000476519 PDE3AQ14432 1141 aa14.77□□□□□ -0.05
SYNE1-223ENST00000476519 SH3BP5LQ7L8J4 393 aa14.77□□□□□ -0.05
SYNE1-223ENST00000476519 ERO1AQ96HE7 468 aa14.77□□□□□ -0.05
SYNE1-223ENST00000476519 SNRKQ9NRH2 765 aa14.77□□□□□ -0.05
SYNE1-223ENST00000476519 DBNLQ9UJU6 430 aaKnown RBP14.77□□□□□ -0.05
SYNE1-223ENST00000476519 PHF20L1A8MW92 1017 aa14.76□□□□□ -0.05
SYNE1-223ENST00000476519 CXCL11O14625 94 aa14.76□□□□□ -0.05
SYNE1-223ENST00000476519 CYP2E1P05181 493 aaPredicted RBP14.76□□□□□ -0.05
SYNE1-223ENST00000476519 PPP4CP60510 307 aa14.76□□□□□ -0.05
SYNE1-223ENST00000476519 SP3Q02447 781 aa14.76□□□□□ -0.05
SYNE1-223ENST00000476519 ARHGEF6Q15052 776 aa14.76□□□□□ -0.05
SYNE1-223ENST00000476519 NAA16Q6N069 864 aaPredicted RBP14.76□□□□□ -0.05
SYNE1-223ENST00000476519 FBXO46Q6PJ61 603 aaPredicted RBP14.76□□□□□ -0.05
SYNE1-223ENST00000476519 TMED8Q6PL24 325 aaPredicted RBP14.76□□□□□ -0.05
SYNE1-223ENST00000476519 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.76□□□□□ -0.05
SYNE1-223ENST00000476519 NOL10Q9BSC4 688 aaKnown RBP14.76□□□□□ -0.05
SYNE1-223ENST00000476519 CCDC8Q9H0W5 538 aaPredicted RBP14.76□□□□□ -0.05
SYNE1-223ENST00000476519 DDX4Q9NQI0 724 aaKnown RBP14.76□□□□□ -0.05
SYNE1-223ENST00000476519 HPS5Q9UPZ3 1129 aa14.76□□□□□ -0.05
SYNE1-223ENST00000476519 KCNH4Q9UQ05 1017 aa14.76□□□□□ -0.05
SYNE1-223ENST00000476519 COG6Q9Y2V7 657 aa14.76□□□□□ -0.05
SYNE1-223ENST00000476519 RFX7Q2KHR2 1363 aa14.75□□□□□ -0.05
SYNE1-223ENST00000476519 ATRNL1Q5VV63 1379 aa14.75□□□□□ -0.05
SYNE1-223ENST00000476519 DDTLA6NHG4 134 aaPredicted RBP14.75□□□□□ -0.05
SYNE1-223ENST00000476519 CTNND1O60716 968 aaKnown RBP14.75□□□□□ -0.05
SYNE1-223ENST00000476519 PLCG2P16885 1265 aa14.75□□□□□ -0.05
SYNE1-223ENST00000476519 PICALMQ13492 652 aa14.75□□□□□ -0.05
SYNE1-223ENST00000476519 TAF1CQ15572 869 aaPredicted RBP14.75□□□□□ -0.05
SYNE1-223ENST00000476519 FAM43AQ8N2R8 423 aa14.75□□□□□ -0.05
SYNE1-223ENST00000476519 PICK1Q9NRD5 415 aa14.75□□□□□ -0.05
SYNE1-223ENST00000476519 EXOC6BQ9Y2D4 811 aa14.75□□□□□ -0.05
SYNE1-223ENST00000476519 BTBD19C9JJ37 291 aa14.74□□□□□ -0.05
SYNE1-223ENST00000476519 ZAP70P43403 619 aa14.74□□□□□ -0.05
SYNE1-223ENST00000476519 AACSQ86V21 672 aa14.74□□□□□ -0.05
SYNE1-223ENST00000476519 SCYL3Q8IZE3 742 aa14.74□□□□□ -0.05
SYNE1-223ENST00000476519 RHPN1Q8TCX5 695 aa14.74□□□□□ -0.05
SYNE1-223ENST00000476519 TLR2O60603 784 aa14.73□□□□□ -0.05
SYNE1-223ENST00000476519 RAB11FIP3O75154 756 aa14.73□□□□□ -0.05
SYNE1-223ENST00000476519 OTOP1Q7RTM1 612 aa14.73□□□□□ -0.05
SYNE1-223ENST00000476519 ANKRD23Q86SG2 305 aa14.73□□□□□ -0.05
SYNE1-223ENST00000476519 SIRT2Q8IXJ6 389 aa14.73□□□□□ -0.05
SYNE1-223ENST00000476519 TEX11Q8IYF3 940 aa14.73□□□□□ -0.05
SYNE1-223ENST00000476519 CLASRPQ8N2M8 674 aaKnown RBP14.73□□□□□ -0.05
SYNE1-223ENST00000476519 KIF1BPQ96EK5 621 aa14.73□□□□□ -0.05
SYNE1-223ENST00000476519 DHX36Q9H2U1 1008 aaKnown RBP14.73□□□□□ -0.05
SYNE1-223ENST00000476519 TLR7Q9NYK1 1049 aaKnown RBP14.73□□□□□ -0.05
SYNE1-223ENST00000476519 TRIM17Q9Y577 477 aa14.73□□□□□ -0.05
SYNE1-223ENST00000476519 ZHX2Q9Y6X8 837 aa14.73□□□□□ -0.05
SYNE1-223ENST00000476519 PTPRAP18433 802 aa14.72□□□□□ -0.05
SYNE1-223ENST00000476519 MLLT1Q03111 559 aaPredicted RBP14.72□□□□□ -0.05
SYNE1-223ENST00000476519 FASTKD5Q7L8L6 764 aaKnown RBP14.72□□□□□ -0.05
SYNE1-223ENST00000476519 CERS3Q8IU89 383 aa14.72□□□□□ -0.05
SYNE1-223ENST00000476519 OSBPL5Q9H0X9 879 aaPredicted RBP14.72□□□□□ -0.05
SYNE1-223ENST00000476519 EFCC1Q9HA90 598 aa14.72□□□□□ -0.05
SYNE1-223ENST00000476519 PIH1D3Q9NQM4 214 aaKnown RBP14.72□□□□□ -0.05
SYNE1-223ENST00000476519 AATFQ9NY61 560 aaKnown RBP eCLIP14.72□□□□□ -0.05
SYNE1-223ENST00000476519 PI4KBQ9UBF8 816 aa14.72□□□□□ -0.05
SYNE1-223ENST00000476519 MAP3K12Q12852 859 aa14.71□□□□□ -0.05
SYNE1-223ENST00000476519 FOXP4Q8IVH2 680 aaPredicted RBP14.71□□□□□ -0.05
SYNE1-223ENST00000476519 SH3RF3Q8TEJ3 882 aaPredicted RBP14.71□□□□□ -0.05
SYNE1-223ENST00000476519 HERC5Q9UII4 1024 aaKnown RBP14.71□□□□□ -0.05
SYNE1-223ENST00000476519 AFG3L2Q9Y4W6 797 aa14.71□□□□□ -0.05
SYNE1-223ENST00000476519 IDH1O75874 414 aaKnown RBP14.7□□□□□ -0.06
SYNE1-223ENST00000476519 CYP7A1P22680 504 aa14.7□□□□□ -0.06
SYNE1-223ENST00000476519 MOGSQ13724 837 aa14.7□□□□□ -0.06
SYNE1-223ENST00000476519 TTF1Q15361 905 aaPredicted RBP14.7□□□□□ -0.06
SYNE1-223ENST00000476519 CD99L2Q8TCZ2 262 aa14.7□□□□□ -0.06
SYNE1-223ENST00000476519 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.7□□□□□ -0.06
SYNE1-223ENST00000476519 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.7□□□□□ -0.06
SYNE1-223ENST00000476519 IL1RAPL2Q9NP60 686 aa14.7□□□□□ -0.06
SYNE1-223ENST00000476519 PTPN22Q9Y2R2 807 aa14.7□□□□□ -0.06
SYNE1-223ENST00000476519 MYH13Q9UKX3 1938 aa14.7□□□□□ -0.06
SYNE1-223ENST00000476519 COL2A1P02458 1487 aaPredicted RBP14.69□□□□□ -0.06
SYNE1-223ENST00000476519 PDHXO00330 501 aa14.69□□□□□ -0.06
SYNE1-223ENST00000476519 GNRH1P01148 92 aa14.69□□□□□ -0.06
SYNE1-223ENST00000476519 IFIT2P09913 472 aaKnown RBP14.69□□□□□ -0.06
SYNE1-223ENST00000476519 KIF22Q14807 665 aa14.69□□□□□ -0.06
SYNE1-223ENST00000476519 C17orf99Q6UX52 265 aa14.69□□□□□ -0.06
SYNE1-223ENST00000476519 ADGRA1Q86SQ6 560 aa14.69□□□□□ -0.06
SYNE1-223ENST00000476519 METTL16Q86W50 562 aaKnown RBP14.69□□□□□ -0.06
SYNE1-223ENST00000476519 TGFBRAP1Q8WUH2 860 aa14.69□□□□□ -0.06
SYNE1-223ENST00000476519 TBC1D2Q9BYX2 928 aa14.69□□□□□ -0.06
SYNE1-223ENST00000476519 A0A0G2JLL6 359 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-223ENST00000476519 C20orf194Q5TEA3 1177 aa14.68□□□□□ -0.06
SYNE1-223ENST00000476519 GPAT2Q6NUI2 795 aa14.68□□□□□ -0.06
SYNE1-223ENST00000476519 PRRT2Q7Z6L0 340 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-223ENST00000476519 MAGEB6Q8N7X4 407 aa14.68□□□□□ -0.06
SYNE1-223ENST00000476519 SLC45A1Q9Y2W3 748 aa14.68□□□□□ -0.06
SYNE1-223ENST00000476519 MYH2Q9UKX2 1941 aa14.68□□□□□ -0.06
SYNE1-223ENST00000476519 SLURP2P0DP57 97 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms