RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 MAP3K10Q02779 954 aa17.36■□□□□ 0.37
UPF3A-204ENST00000475218 PPIL2Q13356 520 aa17.36■□□□□ 0.37
UPF3A-204ENST00000475218 CYP2E1P05181 493 aaPredicted RBP17.35■□□□□ 0.37
UPF3A-204ENST00000475218 MOGSQ13724 837 aa17.35■□□□□ 0.37
UPF3A-204ENST00000475218 NOL9Q5SY16 702 aaKnown RBP17.35■□□□□ 0.37
UPF3A-204ENST00000475218 SIRT2Q8IXJ6 389 aa17.35■□□□□ 0.37
UPF3A-204ENST00000475218 OS9Q13438 667 aaPredicted RBP17.35■□□□□ 0.37
UPF3A-204ENST00000475218 PKN2Q16513 984 aaKnown RBP17.35■□□□□ 0.37
UPF3A-204ENST00000475218 SLF2Q8IX21 1173 aa17.35■□□□□ 0.37
UPF3A-204ENST00000475218 ZNF512BQ96KM6 892 aaPredicted RBP17.35■□□□□ 0.37
UPF3A-204ENST00000475218 EXOC6BQ9Y2D4 811 aa17.35■□□□□ 0.37
UPF3A-204ENST00000475218 ZSWIM8A7E2V4 1837 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 BTBD19C9JJ37 291 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 PPATQ06203 517 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 PICALMQ13492 652 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 OTUD7BQ6GQQ9 843 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 OTOP1Q7RTM1 612 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 ADGRA1Q86SQ6 560 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 CD99L2Q8TCZ2 262 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 CDK5RAP2Q96SN8 1893 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 CCDC8Q9H0W5 538 aaPredicted RBP17.34■□□□□ 0.37
UPF3A-204ENST00000475218 COG6Q9Y2V7 657 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 PHIPQ8WWQ0 1821 aa17.34■□□□□ 0.37
UPF3A-204ENST00000475218 SIPA1L1O43166 1804 aa17.33■□□□□ 0.37
UPF3A-204ENST00000475218 ZAP70P43403 619 aa17.33■□□□□ 0.37
UPF3A-204ENST00000475218 TTC39AQ5SRH9 613 aa17.33■□□□□ 0.37
UPF3A-204ENST00000475218 FBXO46Q6PJ61 603 aaPredicted RBP17.33■□□□□ 0.37
UPF3A-204ENST00000475218 PIH1D3Q9NQM4 214 aaKnown RBP17.33■□□□□ 0.37
UPF3A-204ENST00000475218 ZBTB40Q9NUA8 1239 aa17.33■□□□□ 0.37
UPF3A-204ENST00000475218 RAI14Q9P0K7 980 aa17.33■□□□□ 0.37
UPF3A-204ENST00000475218 RCAN3Q9UKA8 241 aa17.33■□□□□ 0.37
UPF3A-204ENST00000475218 KCNH4Q9UQ05 1017 aa17.33■□□□□ 0.37
UPF3A-204ENST00000475218 NPM3O75607 178 aaKnown RBP17.33■□□□□ 0.36
UPF3A-204ENST00000475218 CETPP11597 493 aa17.33■□□□□ 0.36
UPF3A-204ENST00000475218 SOX10P56693 466 aa17.33■□□□□ 0.36
UPF3A-204ENST00000475218 SNAPC2Q13487 334 aa17.33■□□□□ 0.36
UPF3A-204ENST00000475218 C20orf194Q5TEA3 1177 aa17.33■□□□□ 0.36
UPF3A-204ENST00000475218 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.33■□□□□ 0.36
UPF3A-204ENST00000475218 TAF1CQ15572 869 aaPredicted RBP17.32■□□□□ 0.36
UPF3A-204ENST00000475218 CCDC158Q5M9N0 1113 aa17.32■□□□□ 0.36
UPF3A-204ENST00000475218 BRCA2P51587 3418 aa17.32■□□□□ 0.36
UPF3A-204ENST00000475218 DOCK1Q14185 1865 aa17.32■□□□□ 0.36
UPF3A-204ENST00000475218 FOCADQ5VW36 1801 aa17.31■□□□□ 0.36
UPF3A-204ENST00000475218 GSTO1P78417 241 aa17.31■□□□□ 0.36
UPF3A-204ENST00000475218 SP3Q02447 781 aa17.31■□□□□ 0.36
UPF3A-204ENST00000475218 SH3RF3Q8TEJ3 882 aaPredicted RBP17.31■□□□□ 0.36
UPF3A-204ENST00000475218 LRP2BPQ9P2M1 347 aa17.31■□□□□ 0.36
UPF3A-204ENST00000475218 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.31■□□□□ 0.36
UPF3A-204ENST00000475218 TRIM17Q9Y577 477 aa17.31■□□□□ 0.36
UPF3A-204ENST00000475218 NDUFB9Q9Y6M9 179 aa17.31■□□□□ 0.36
UPF3A-204ENST00000475218 COL2A1P02458 1487 aaPredicted RBP17.31■□□□□ 0.36
UPF3A-204ENST00000475218 MKI67P46013 3256 aaKnown RBP17.31■□□□□ 0.36
UPF3A-204ENST00000475218 PTPRFP10586 1907 aa17.31■□□□□ 0.36
UPF3A-204ENST00000475218 FAM196BA6NMK8 535 aa17.3■□□□□ 0.36
UPF3A-204ENST00000475218 LDHCP07864 332 aa17.3■□□□□ 0.36
UPF3A-204ENST00000475218 ZCCHC17Q9NP64 241 aaKnown RBP17.3■□□□□ 0.36
UPF3A-204ENST00000475218 RRP1BQ14684 758 aaKnown RBP17.3■□□□□ 0.36
UPF3A-204ENST00000475218 ZSCAN29Q8IWY8 852 aaPredicted RBP17.3■□□□□ 0.36
UPF3A-204ENST00000475218 SCYL3Q8IZE3 742 aa17.3■□□□□ 0.36
UPF3A-204ENST00000475218 OSBPL5Q9H0X9 879 aaPredicted RBP17.3■□□□□ 0.36
UPF3A-204ENST00000475218 ADGRA2Q96PE1 1338 aa17.29■□□□□ 0.36
UPF3A-204ENST00000475218 PTPRAP18433 802 aa17.29■□□□□ 0.36
UPF3A-204ENST00000475218 MLLT1Q03111 559 aaPredicted RBP17.29■□□□□ 0.36
UPF3A-204ENST00000475218 NAA16Q6N069 864 aaPredicted RBP17.29■□□□□ 0.36
UPF3A-204ENST00000475218 GPAT2Q6NUI2 795 aa17.29■□□□□ 0.36
UPF3A-204ENST00000475218 ERO1AQ96HE7 468 aa17.29■□□□□ 0.36
UPF3A-204ENST00000475218 ANTXR1Q9H6X2 564 aa17.29■□□□□ 0.36
UPF3A-204ENST00000475218 ZFYVE28Q9HCC9 887 aa17.29■□□□□ 0.36
UPF3A-204ENST00000475218 TLR2O60603 784 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 MAP4K4O95819 1239 aaPredicted RBP17.28■□□□□ 0.36
UPF3A-204ENST00000475218 MS4A1P11836 297 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 PPP4CP60510 307 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 CCDC84Q86UT8 332 aaPredicted RBP17.28■□□□□ 0.36
UPF3A-204ENST00000475218 IL1RAPL2Q9NP60 686 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 AATFQ9NY61 560 aaKnown RBP eCLIP17.28■□□□□ 0.36
UPF3A-204ENST00000475218 DDX19BQ9UMR2 479 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 TBC1D12O60347 775 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 ANKRD23Q86SG2 305 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 AACSQ86V21 672 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 TEX11Q8IYF3 940 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 RHPN1Q8TCX5 695 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 ARHGAP39Q9C0H5 1083 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 PTPN22Q9Y2R2 807 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 AFG3L2Q9Y4W6 797 aa17.28■□□□□ 0.36
UPF3A-204ENST00000475218 CTGFP29279 349 aa17.27■□□□□ 0.35
UPF3A-204ENST00000475218 C17orf99Q6UX52 265 aa17.27■□□□□ 0.35
UPF3A-204ENST00000475218 RPAP2Q8IXW5 612 aaPredicted RBP17.27■□□□□ 0.35
UPF3A-204ENST00000475218 ZHX2Q9Y6X8 837 aa17.27■□□□□ 0.35
UPF3A-204ENST00000475218 ATAD5Q96QE3 1844 aa17.27■□□□□ 0.35
UPF3A-204ENST00000475218 PDHXO00330 501 aa17.26■□□□□ 0.35
UPF3A-204ENST00000475218 CXCL11O14625 94 aa17.26■□□□□ 0.35
UPF3A-204ENST00000475218 CTNND1O60716 968 aaKnown RBP17.26■□□□□ 0.35
UPF3A-204ENST00000475218 ERC1Q8IUD2 1116 aa17.26■□□□□ 0.35
UPF3A-204ENST00000475218 EFCC1Q9HA90 598 aa17.26■□□□□ 0.35
UPF3A-204ENST00000475218 A0A0G2JLL6 359 aaPredicted RBP17.25■□□□□ 0.35
UPF3A-204ENST00000475218 DYNLL1P63167 89 aaKnown RBP17.25■□□□□ 0.35
UPF3A-204ENST00000475218 PRRT2Q7Z6L0 340 aaPredicted RBP17.25■□□□□ 0.35
UPF3A-204ENST00000475218 DNAJC18Q9H819 358 aa17.25■□□□□ 0.35
UPF3A-204ENST00000475218 JAG1P78504 1218 aa17.25■□□□□ 0.35
UPF3A-204ENST00000475218 TGFBRAP1Q8WUH2 860 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms