RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PPATQ06203 517 aa22.85■■□□□ 1.25
COL7A1-209ENST00000474432 OTOP1Q7RTM1 612 aa22.85■■□□□ 1.25
COL7A1-209ENST00000474432 EAF2Q96CJ1 260 aaPredicted RBP22.85■■□□□ 1.25
COL7A1-209ENST00000474432 TLR7Q9NYK1 1049 aaKnown RBP22.85■■□□□ 1.25
COL7A1-209ENST00000474432 DBNLQ9UJU6 430 aaKnown RBP22.85■■□□□ 1.25
COL7A1-209ENST00000474432 BTBD19C9JJ37 291 aa22.84■■□□□ 1.25
COL7A1-209ENST00000474432 CETPP11597 493 aa22.84■■□□□ 1.25
COL7A1-209ENST00000474432 OS9Q13438 667 aaPredicted RBP22.84■■□□□ 1.25
COL7A1-209ENST00000474432 MOGSQ13724 837 aa22.84■■□□□ 1.25
COL7A1-209ENST00000474432 CD99L2Q8TCZ2 262 aa22.84■■□□□ 1.25
COL7A1-209ENST00000474432 ZNF512BQ96KM6 892 aaPredicted RBP22.84■■□□□ 1.25
COL7A1-209ENST00000474432 KCNH4Q9UQ05 1017 aa22.84■■□□□ 1.25
COL7A1-209ENST00000474432 HTTP42858 3142 aa22.84■■□□□ 1.25
COL7A1-209ENST00000474432 NPM3O75607 178 aaKnown RBP22.83■■□□□ 1.25
COL7A1-209ENST00000474432 CYP2E1P05181 493 aaPredicted RBP22.83■■□□□ 1.25
COL7A1-209ENST00000474432 SOX10P56693 466 aa22.83■■□□□ 1.25
COL7A1-209ENST00000474432 MLLT1Q03111 559 aaPredicted RBP22.83■■□□□ 1.25
COL7A1-209ENST00000474432 SNAPC2Q13487 334 aa22.83■■□□□ 1.25
COL7A1-209ENST00000474432 TAF1CQ15572 869 aaPredicted RBP22.83■■□□□ 1.25
COL7A1-209ENST00000474432 MAST2Q6P0Q8 1798 aa22.83■■□□□ 1.24
COL7A1-209ENST00000474432 SP3Q02447 781 aa22.82■■□□□ 1.24
COL7A1-209ENST00000474432 PICALMQ13492 652 aa22.82■■□□□ 1.24
COL7A1-209ENST00000474432 TTC39AQ5SRH9 613 aa22.82■■□□□ 1.24
COL7A1-209ENST00000474432 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.82■■□□□ 1.24
COL7A1-209ENST00000474432 RAI14Q9P0K7 980 aa22.82■■□□□ 1.24
COL7A1-209ENST00000474432 TRIM17Q9Y577 477 aa22.82■■□□□ 1.24
COL7A1-209ENST00000474432 PHIPQ8WWQ0 1821 aa22.82■■□□□ 1.24
COL7A1-209ENST00000474432 CDK5RAP2Q96SN8 1893 aa22.81■■□□□ 1.24
COL7A1-209ENST00000474432 LDHCP07864 332 aa22.81■■□□□ 1.24
COL7A1-209ENST00000474432 GSTO1P78417 241 aa22.81■■□□□ 1.24
COL7A1-209ENST00000474432 CCDC158Q5M9N0 1113 aa22.81■■□□□ 1.24
COL7A1-209ENST00000474432 ERO1AQ96HE7 468 aa22.81■■□□□ 1.24
COL7A1-209ENST00000474432 CCDC8Q9H0W5 538 aaPredicted RBP22.81■■□□□ 1.24
COL7A1-209ENST00000474432 ZFYVE28Q9HCC9 887 aa22.81■■□□□ 1.24
COL7A1-209ENST00000474432 ZCCHC17Q9NP64 241 aaKnown RBP22.81■■□□□ 1.24
COL7A1-209ENST00000474432 ZSWIM8A7E2V4 1837 aa22.8■■□□□ 1.24
COL7A1-209ENST00000474432 ZAP70P43403 619 aa22.8■■□□□ 1.24
COL7A1-209ENST00000474432 ADGRA1Q86SQ6 560 aa22.8■■□□□ 1.24
COL7A1-209ENST00000474432 SIRT2Q8IXJ6 389 aa22.8■■□□□ 1.24
COL7A1-209ENST00000474432 PIH1D3Q9NQM4 214 aaKnown RBP22.8■■□□□ 1.24
COL7A1-209ENST00000474432 LRP2BPQ9P2M1 347 aa22.8■■□□□ 1.24
COL7A1-209ENST00000474432 EXOC6BQ9Y2D4 811 aa22.8■■□□□ 1.24
COL7A1-209ENST00000474432 TNRC18O15417 2968 aaPredicted RBP22.8■■□□□ 1.24
COL7A1-209ENST00000474432 DOCK1Q14185 1865 aa22.79■■□□□ 1.24
COL7A1-209ENST00000474432 PTPRFP10586 1907 aa22.79■■□□□ 1.24
COL7A1-209ENST00000474432 MAP4K4O95819 1239 aaPredicted RBP22.79■■□□□ 1.24
COL7A1-209ENST00000474432 ZSCAN29Q8IWY8 852 aaPredicted RBP22.79■■□□□ 1.24
COL7A1-209ENST00000474432 SCYL3Q8IZE3 742 aa22.79■■□□□ 1.24
COL7A1-209ENST00000474432 ZBTB40Q9NUA8 1239 aa22.79■■□□□ 1.24
COL7A1-209ENST00000474432 COG6Q9Y2V7 657 aa22.79■■□□□ 1.24
COL7A1-209ENST00000474432 SIPA1L1O43166 1804 aa22.79■■□□□ 1.24
COL7A1-209ENST00000474432 COL2A1P02458 1487 aaPredicted RBP22.79■■□□□ 1.24
COL7A1-209ENST00000474432 TLR2O60603 784 aa22.78■■□□□ 1.24
COL7A1-209ENST00000474432 SH3RF3Q8TEJ3 882 aaPredicted RBP22.78■■□□□ 1.24
COL7A1-209ENST00000474432 RCAN3Q9UKA8 241 aa22.78■■□□□ 1.24
COL7A1-209ENST00000474432 PTPN22Q9Y2R2 807 aa22.78■■□□□ 1.24
COL7A1-209ENST00000474432 FOCADQ5VW36 1801 aa22.78■■□□□ 1.24
COL7A1-209ENST00000474432 TBC1D12O60347 775 aa22.77■■□□□ 1.24
COL7A1-209ENST00000474432 MS4A1P11836 297 aa22.77■■□□□ 1.24
COL7A1-209ENST00000474432 PTPRAP18433 802 aa22.77■■□□□ 1.24
COL7A1-209ENST00000474432 PPP4CP60510 307 aa22.77■■□□□ 1.24
COL7A1-209ENST00000474432 ANKRD23Q86SG2 305 aa22.77■■□□□ 1.24
COL7A1-209ENST00000474432 OSBPL5Q9H0X9 879 aaPredicted RBP22.77■■□□□ 1.24
COL7A1-209ENST00000474432 ADGRA2Q96PE1 1338 aa22.77■■□□□ 1.24
COL7A1-209ENST00000474432 FAM196BA6NMK8 535 aa22.76■■□□□ 1.23
COL7A1-209ENST00000474432 CXCL11O14625 94 aa22.76■■□□□ 1.23
COL7A1-209ENST00000474432 GPAT2Q6NUI2 795 aa22.76■■□□□ 1.23
COL7A1-209ENST00000474432 EFCC1Q9HA90 598 aa22.76■■□□□ 1.23
COL7A1-209ENST00000474432 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.76■■□□□ 1.23
COL7A1-209ENST00000474432 RRP1BQ14684 758 aaKnown RBP22.75■■□□□ 1.23
COL7A1-209ENST00000474432 NAA16Q6N069 864 aaPredicted RBP22.75■■□□□ 1.23
COL7A1-209ENST00000474432 C17orf99Q6UX52 265 aa22.75■■□□□ 1.23
COL7A1-209ENST00000474432 TEX11Q8IYF3 940 aa22.75■■□□□ 1.23
COL7A1-209ENST00000474432 AATFQ9NY61 560 aaKnown RBP eCLIP22.75■■□□□ 1.23
COL7A1-209ENST00000474432 DDX19BQ9UMR2 479 aa22.75■■□□□ 1.23
COL7A1-209ENST00000474432 AFG3L2Q9Y4W6 797 aa22.75■■□□□ 1.23
COL7A1-209ENST00000474432 NDUFB9Q9Y6M9 179 aa22.75■■□□□ 1.23
COL7A1-209ENST00000474432 ZHX2Q9Y6X8 837 aa22.75■■□□□ 1.23
COL7A1-209ENST00000474432 PDHXO00330 501 aa22.74■■□□□ 1.23
COL7A1-209ENST00000474432 CTNND1O60716 968 aaKnown RBP22.74■■□□□ 1.23
COL7A1-209ENST00000474432 C20orf194Q5TEA3 1177 aa22.74■■□□□ 1.23
COL7A1-209ENST00000474432 RPAP2Q8IXW5 612 aaPredicted RBP22.74■■□□□ 1.23
COL7A1-209ENST00000474432 RHPN1Q8TCX5 695 aa22.74■■□□□ 1.23
COL7A1-209ENST00000474432 ARHGAP39Q9C0H5 1083 aa22.74■■□□□ 1.23
COL7A1-209ENST00000474432 IGSF3O75054 1194 aa22.73■■□□□ 1.23
COL7A1-209ENST00000474432 CCDC84Q86UT8 332 aaPredicted RBP22.73■■□□□ 1.23
COL7A1-209ENST00000474432 ERC1Q8IUD2 1116 aa22.73■■□□□ 1.23
COL7A1-209ENST00000474432 ANTXR1Q9H6X2 564 aa22.73■■□□□ 1.23
COL7A1-209ENST00000474432 IL1RAPL2Q9NP60 686 aa22.73■■□□□ 1.23
COL7A1-209ENST00000474432 ATAD5Q96QE3 1844 aa22.73■■□□□ 1.23
COL7A1-209ENST00000474432 A0A0G2JLL6 359 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-209ENST00000474432 CTGFP29279 349 aa22.72■■□□□ 1.23
COL7A1-209ENST00000474432 PRRT2Q7Z6L0 340 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-209ENST00000474432 AACSQ86V21 672 aa22.72■■□□□ 1.23
COL7A1-209ENST00000474432 PICK1Q9NRD5 415 aa22.72■■□□□ 1.23
COL7A1-209ENST00000474432 PDE4DIPQ5VU43 2346 aa22.71■■□□□ 1.23
COL7A1-209ENST00000474432 DYNLL1P63167 89 aaKnown RBP22.71■■□□□ 1.23
COL7A1-209ENST00000474432 LACTBP83111 547 aaPredicted RBP22.71■■□□□ 1.23
COL7A1-209ENST00000474432 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.71■■□□□ 1.23
COL7A1-209ENST00000474432 CPA4Q9UI42 421 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms