RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 CD320Q9NPF0 282 aa4.85□□□□□ -1.63
CCDC39-203ENST00000473854 PRDM7Q9NQW5 492 aa4.85□□□□□ -1.63
CCDC39-203ENST00000473854 FOXD3Q9UJU5 478 aaPredicted RBP4.85□□□□□ -1.63
CCDC39-203ENST00000473854 POLIQ9UNA4 740 aa4.85□□□□□ -1.63
CCDC39-203ENST00000473854 RNGTTO60942 597 aaKnown RBP4.84□□□□□ -1.63
CCDC39-203ENST00000473854 ATG7O95352 703 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 KRT1P04264 644 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 ATP2B4P23634 1241 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 PTPN12Q05209 780 aaKnown RBP4.84□□□□□ -1.63
CCDC39-203ENST00000473854 AAMPQ13685 434 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 TMEM164Q5U3C3 297 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 EPB41L4BQ9H329 900 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 ZNF576Q9H609 170 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 NSUN3Q9H649 340 aaKnown RBP4.84□□□□□ -1.63
CCDC39-203ENST00000473854 ZFYVE28Q9HCC9 887 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 KRT82Q9NSB4 513 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 SEPT3Q9UH03 358 aa4.84□□□□□ -1.63
CCDC39-203ENST00000473854 A0A1W2PP55 124 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 GNAT3A8MTJ3 354 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 LEFTY1O75610 366 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 ECEL1O95672 775 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 GLDCP23378 1020 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 GDNFP39905 211 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 GRIA4P48058 902 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 SPRED3Q2MJR0 410 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 KIF4BQ2VIQ3 1234 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 RPS26P11Q5JNZ5 115 aaPredicted RBP4.83□□□□□ -1.64
CCDC39-203ENST00000473854 FYB2Q5VWT5 728 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 GALNT12Q8IXK2 581 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 TOP6BLQ8N6T0 577 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 BORCS6Q96GS4 357 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 TCF12Q99081 682 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 SSU72Q9NP77 194 aaKnown RBP4.83□□□□□ -1.64
CCDC39-203ENST00000473854 U3KQE9 123 aa4.83□□□□□ -1.64
CCDC39-203ENST00000473854 NUAK1O60285 661 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 NEFLP07196 543 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 HOXA5P20719 270 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 ITPKAP23677 461 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 MPSTP25325 297 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 TTLL4Q14679 1199 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 ATG14Q6ZNE5 492 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 SLC26A8Q96RN1 970 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 DIRC2Q96SL1 478 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 DCP1AQ9NPI6 582 aaPredicted RBP4.82□□□□□ -1.64
CCDC39-203ENST00000473854 DISC1Q9NRI5 854 aa4.82□□□□□ -1.64
CCDC39-203ENST00000473854 PITPNM2Q9BZ72 1349 aa4.81□□□□□ -1.64
CCDC39-203ENST00000473854 FAM13AO94988 1023 aa4.81□□□□□ -1.64
CCDC39-203ENST00000473854 HCLS1P14317 486 aaPredicted RBP4.81□□□□□ -1.64
CCDC39-203ENST00000473854 RAC2P15153 192 aa4.81□□□□□ -1.64
CCDC39-203ENST00000473854 LIG1P18858 919 aa4.81□□□□□ -1.64
CCDC39-203ENST00000473854 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.81□□□□□ -1.64
CCDC39-203ENST00000473854 SPACA3Q8IXA5 215 aa4.81□□□□□ -1.64
CCDC39-203ENST00000473854 SRFP11831 508 aa4.8□□□□□ -1.64
CCDC39-203ENST00000473854 KRTAP1-1Q07627 177 aa4.8□□□□□ -1.64
CCDC39-203ENST00000473854 KIAA0319Q5VV43 1072 aa4.8□□□□□ -1.64
CCDC39-203ENST00000473854 NPAS4Q8IUM7 802 aa4.8□□□□□ -1.64
CCDC39-203ENST00000473854 CCDC86Q9H6F5 360 aaKnown RBP4.8□□□□□ -1.64
CCDC39-203ENST00000473854 PARD6AQ9NPB6 346 aa4.8□□□□□ -1.64
CCDC39-203ENST00000473854 NPR3P17342 541 aa4.79□□□□□ -1.64
CCDC39-203ENST00000473854 SYN1P17600 705 aa4.79□□□□□ -1.64
CCDC39-203ENST00000473854 LINC00310P59036 64 aa4.79□□□□□ -1.64
CCDC39-203ENST00000473854 ERICH6BQ5W0A0 696 aa4.79□□□□□ -1.64
CCDC39-203ENST00000473854 GJD3Q8N144 294 aa4.79□□□□□ -1.64
CCDC39-203ENST00000473854 HEXIM2Q96MH2 286 aaKnown RBP4.79□□□□□ -1.64
CCDC39-203ENST00000473854 SMG5Q9UPR3 1016 aaKnown RBP4.79□□□□□ -1.64
CCDC39-203ENST00000473854 PCDHGC5Q9Y5F6 944 aa4.79□□□□□ -1.64
CCDC39-203ENST00000473854 POLR3DP05423 398 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-203ENST00000473854 GSTP1P09211 210 aaKnown RBP4.78□□□□□ -1.64
CCDC39-203ENST00000473854 RNF214Q8ND24 703 aa4.78□□□□□ -1.64
CCDC39-203ENST00000473854 GTF3C2Q8WUA4 911 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-203ENST00000473854 ISL2Q96A47 359 aa4.78□□□□□ -1.64
CCDC39-203ENST00000473854 WDR89Q96FK6 387 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-203ENST00000473854 FOXQ1Q9C009 403 aa4.78□□□□□ -1.64
CCDC39-203ENST00000473854 EHD4Q9H223 541 aa4.78□□□□□ -1.64
CCDC39-203ENST00000473854 ZCCHC4Q9H5U6 513 aa4.78□□□□□ -1.64
CCDC39-203ENST00000473854 CARS2Q9HA77 564 aaKnown RBP4.78□□□□□ -1.64
CCDC39-203ENST00000473854 MAPK8IP1Q9UQF2 711 aa4.78□□□□□ -1.64
CCDC39-203ENST00000473854 MTMR7Q9Y216 660 aa4.78□□□□□ -1.64
CCDC39-203ENST00000473854 ZNF862O60290 1169 aa4.77□□□□□ -1.65
CCDC39-203ENST00000473854 FOXD2O60548 495 aaPredicted RBP4.77□□□□□ -1.65
CCDC39-203ENST00000473854 ERVK-24P63145 666 aa4.77□□□□□ -1.65
CCDC39-203ENST00000473854 PPP2R3AQ06190 1150 aa4.77□□□□□ -1.65
CCDC39-203ENST00000473854 NKPD1Q17RQ9 610 aa4.77□□□□□ -1.65
CCDC39-203ENST00000473854 KCNN1Q92952 543 aa4.77□□□□□ -1.65
CCDC39-203ENST00000473854 PRDM10Q9NQV6 1147 aa4.77□□□□□ -1.65
CCDC39-203ENST00000473854 ETV2O00321 342 aaPredicted RBP4.76□□□□□ -1.65
CCDC39-203ENST00000473854 NEFMP07197 916 aa4.76□□□□□ -1.65
CCDC39-203ENST00000473854 SF3B2Q13435 895 aaKnown RBP4.76□□□□□ -1.65
CCDC39-203ENST00000473854 PRPF40BQ6NWY9 871 aaKnown RBP4.76□□□□□ -1.65
CCDC39-203ENST00000473854 FAM214BQ7L5A3 538 aa4.76□□□□□ -1.65
CCDC39-203ENST00000473854 ABHD4Q8TB40 342 aa4.76□□□□□ -1.65
CCDC39-203ENST00000473854 C20orf173Q96LM9 149 aa4.76□□□□□ -1.65
CCDC39-203ENST00000473854 PRDM5Q9NQX1 630 aaPredicted RBP4.76□□□□□ -1.65
CCDC39-203ENST00000473854 TRAK1Q9UPV9 953 aa4.76□□□□□ -1.65
CCDC39-203ENST00000473854 SRPK2P78362 688 aaKnown RBP4.75□□□□□ -1.65
CCDC39-203ENST00000473854 NFIXQ14938 502 aa4.75□□□□□ -1.65
CCDC39-203ENST00000473854 KCT2Q8NC54 265 aa4.75□□□□□ -1.65
CCDC39-203ENST00000473854 ALPK1Q96QP1 1244 aa4.75□□□□□ -1.65
CCDC39-203ENST00000473854 ZC3H12CQ9C0D7 883 aaKnown RBP4.75□□□□□ -1.65
CCDC39-203ENST00000473854 C19orf73Q9NVV2 129 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms