RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TBC1D10CQ8IV04 446 aa15.14■□□□□ 0.01
VPS13D-205ENST00000473099 NIM1KQ8IY84 436 aa15.14■□□□□ 0.01
VPS13D-205ENST00000473099 CERS5Q8N5B7 392 aa15.14■□□□□ 0.01
VPS13D-205ENST00000473099 SPRYD3Q8NCJ5 442 aa15.14■□□□□ 0.01
VPS13D-205ENST00000473099 TMEM87BQ96K49 555 aa15.14■□□□□ 0.01
VPS13D-205ENST00000473099 NBPF3Q9H094 633 aa15.14■□□□□ 0.01
VPS13D-205ENST00000473099 DAGLAQ9Y4D2 1042 aa15.14■□□□□ 0.01
VPS13D-205ENST00000473099 PDIA4P13667 645 aaKnown RBP15.13■□□□□ 0.01
VPS13D-205ENST00000473099 DDIT3P35638 169 aa15.13■□□□□ 0.01
VPS13D-205ENST00000473099 MMP14P50281 582 aa15.13■□□□□ 0.01
VPS13D-205ENST00000473099 TEX11Q8IYF3 940 aa15.13■□□□□ 0.01
VPS13D-205ENST00000473099 SH3RF3Q8TEJ3 882 aaPredicted RBP15.13■□□□□ 0.01
VPS13D-205ENST00000473099 ROBO3Q96MS0 1386 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 MINDY4BA8MYZ0 360 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 USP17L12C9JPN9 530 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 USP17L21D6R901 530 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 PRC1O43663 620 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 FGRP09769 529 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 NUCB2P80303 420 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 SART3Q15020 963 aaKnown RBP15.12■□□□□ 0.01
VPS13D-205ENST00000473099 GPR162Q16538 588 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 CTR9Q6PD62 1173 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 ESR2Q92731 530 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 ZNF274Q96GC6 653 aaPredicted RBP15.12■□□□□ 0.01
VPS13D-205ENST00000473099 ZDHHC15Q96MV8 337 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 ZNF287Q9HBT7 754 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 ZNF277Q9NRM2 450 aaPredicted RBP15.12■□□□□ 0.01
VPS13D-205ENST00000473099 MKRN1Q9UHC7 482 aaKnown RBP15.12■□□□□ 0.01
VPS13D-205ENST00000473099 SERPINA10Q9UK55 444 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 ZNRF3Q9ULT6 936 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 BCS1LQ9Y276 419 aa15.12■□□□□ 0.01
VPS13D-205ENST00000473099 ORC4O43929 436 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 EVCP57679 992 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 RHBDL3P58872 404 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 CTDSPL2Q05D32 466 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 PDE4BQ07343 736 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 JDP2Q8WYK2 163 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 BRF1Q92994 677 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 TCEANC2Q96MN5 208 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 MCM9Q9NXL9 1143 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 TPCN1Q9ULQ1 816 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 NEDD4P46934 1319 aa15.11■□□□□ 0.01
VPS13D-205ENST00000473099 COL4A5P29400 1685 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 TCHHQ07283 1943 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 YDJCA8MPS7 323 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 B4E1Z4 1266 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 F8W031 263 aaPredicted RBP15.1■□□□□ 0.01
VPS13D-205ENST00000473099 VIL1P09327 827 aaKnown RBP15.1■□□□□ 0.01
VPS13D-205ENST00000473099 CRKP46108 304 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 ME3Q16798 604 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 C12orf60Q5U649 245 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 RSBN1LQ6PCB5 846 aaPredicted RBP15.1■□□□□ 0.01
VPS13D-205ENST00000473099 TMTC2Q8N394 836 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 TGFBRAP1Q8WUH2 860 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 HDAC9Q9UKV0 1011 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 TAOK2Q9UL54 1235 aa15.1■□□□□ 0.01
VPS13D-205ENST00000473099 ANGEL1Q9UNK9 670 aaKnown RBP15.1■□□□□ 0.01
VPS13D-205ENST00000473099 ERICH2A1L162 156 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 PFKFB2O60825 505 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 NPM3O75607 178 aaKnown RBP15.09■□□□□ 0.01
VPS13D-205ENST00000473099 LIFRP42702 1097 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 ANTXR2P58335 489 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 KIAA0825Q8IV33 1275 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 AGBL3Q8NEM8 1001 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 LLPHQ9BRT6 129 aaKnown RBP15.09■□□□□ 0.01
VPS13D-205ENST00000473099 KCNQ5Q9NR82 932 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 TOMM22Q9NS69 142 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 FOXD4L1Q9NU39 408 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 SMC3Q9UQE7 1217 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 FLT1P17948 1338 aa15.09■□□□□ 0.01
VPS13D-205ENST00000473099 NFKBIEO00221 500 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 DHX16O60231 1041 aaKnown RBP15.08■□□□□ 0
VPS13D-205ENST00000473099 KDM4AO75164 1064 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 POLR3DP05423 398 aaPredicted RBP15.08■□□□□ 0
VPS13D-205ENST00000473099 SCNN1DP51172 638 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 COL9A3Q14050 684 aaPredicted RBP15.08■□□□□ 0
VPS13D-205ENST00000473099 TNIP1Q15025 636 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 CCDC178Q5BJE1 867 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 SGMS1Q86VZ5 419 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 IQCA1Q86XH1 822 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 CCDC83Q8IWF9 413 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 NLGN2Q8NFZ4 835 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 GTF3C6Q969F1 213 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 MXD3Q9BW11 206 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 LRRC2Q9BYS8 371 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 ZSWIM5Q9P217 1185 aa15.08■□□□□ 0
VPS13D-205ENST00000473099 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.08■□□□□ 0
VPS13D-205ENST00000473099 MYH15Q9Y2K3 1946 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 MYH4Q9Y623 1939 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 SH2B2O14492 632 aaPredicted RBP15.07■□□□□ 0
VPS13D-205ENST00000473099 LARGE1O95461 756 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 RCAN1P53805 252 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 APOBRQ0VD83 1088 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 TMEM67Q5HYA8 995 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 RRP12Q5JTH9 1297 aaKnown RBP15.07■□□□□ 0
VPS13D-205ENST00000473099 CIAPIN1Q6FI81 312 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 CYB5R4Q7L1T6 521 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 TTC6Q86TZ1 520 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 MAPKAPK5Q8IW41 473 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 OGFOD1Q8N543 542 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms