RNA–Protein interactions for RNA: ENST00000472625.1

XRN1-209, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-209ENST00000472625 USP35Q9P2H5 1018 aa4.98□□□□□ -1.61
XRN1-209ENST00000472625 RTCBQ9Y3I0 505 aaKnown RBP4.98□□□□□ -1.61
XRN1-209ENST00000472625 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.98□□□□□ -1.61
XRN1-209ENST00000472625 TTC21AQ8NDW8 1320 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 USP6P35125 1406 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 SLIT3O75094 1523 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 PARP4Q9UKK3 1724 aaKnown RBP4.97□□□□□ -1.61
XRN1-209ENST00000472625 RGPD8O14715 1765 aaPredicted RBP4.97□□□□□ -1.61
XRN1-209ENST00000472625 LMO7Q8WWI1 1683 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 QRICH2Q9H0J4 1663 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 CCDC7Q96M83 1385 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 PLSCR1O15162 318 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 GCP02774 474 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 ITGB7P26010 798 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 GATA4P43694 442 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 MLLT1Q03111 559 aaPredicted RBP4.97□□□□□ -1.61
XRN1-209ENST00000472625 CCINQ13939 588 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 CHRNA2Q15822 529 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 EZH2Q15910 746 aaKnown RBP4.97□□□□□ -1.61
XRN1-209ENST00000472625 GRIK5Q16478 980 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 PRRT3Q5FWE3 981 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 LCE3BQ5TA77 95 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 ADAMTSL4Q6UY14 1074 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 ATCAYQ86WG3 371 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 HELQQ8TDG4 1101 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 PNMA5Q96PV4 448 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 JPH1Q9HDC5 661 aaPredicted RBP4.97□□□□□ -1.61
XRN1-209ENST00000472625 C11orf16Q9NQ32 467 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 STIM2Q9P246 746 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 CPSF1Q10570 1443 aaKnown RBP4.97□□□□□ -1.61
XRN1-209ENST00000472625 WDR17Q8IZU2 1322 aa4.97□□□□□ -1.61
XRN1-209ENST00000472625 RREB1Q92766 1687 aa4.96□□□□□ -1.61
XRN1-209ENST00000472625 SBNO2Q9Y2G9 1366 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 KCNQ2O43526 872 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 MAP3K6O95382 1288 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 HOXD8P13378 290 aaPredicted RBP4.96□□□□□ -1.62
XRN1-209ENST00000472625 BRD2P25440 801 aaKnown RBP4.96□□□□□ -1.62
XRN1-209ENST00000472625 YY1P25490 414 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 TRAPPC3LQ5T215 181 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 PSAPL1Q6NUJ1 521 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 TOM1L2Q6ZVM7 507 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 RGL4Q8IZJ4 473 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 GTF3C2Q8WUA4 911 aaPredicted RBP4.96□□□□□ -1.62
XRN1-209ENST00000472625 VTI1AQ96AJ9 217 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 SEMA6BQ9H3T3 888 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.96□□□□□ -1.62
XRN1-209ENST00000472625 CAMTA1Q9Y6Y1 1673 aa4.96□□□□□ -1.62
XRN1-209ENST00000472625 ROCK2O75116 1388 aaKnown RBP4.95□□□□□ -1.62
XRN1-209ENST00000472625 TRPM1Q7Z4N2 1603 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 LILRB5O75023 590 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 SASH3O75995 380 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 CPB1P15086 417 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 MPSTP25325 297 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 ZAP70P43403 619 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 COL13A1Q5TAT6 717 aaPredicted RBP4.95□□□□□ -1.62
XRN1-209ENST00000472625 NUTM2GQ5VZR2 741 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 SHISA2Q6UWI4 295 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 TRPM4Q8TD43 1214 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 EFCC1Q9HA90 598 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 PRDM6Q9NQX0 595 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 TPSG1Q9NRR2 321 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 STK32BQ9NY57 414 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 TNS2Q63HR2 1409 aa4.95□□□□□ -1.62
XRN1-209ENST00000472625 NUP188Q5SRE5 1749 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 LRRC37A3O60309 1634 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 A0A0A0MRY4 1105 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 SPDYE3A6NKU9 549 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 FZD6O60353 706 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 MMP20O60882 483 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 XYLBO75191 536 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 IGHA2P01877 340 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 TRIM28Q13263 835 aaKnown RBP4.94□□□□□ -1.62
XRN1-209ENST00000472625 HFE2Q6ZVN8 426 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 DMRTC2Q8IXT2 367 aaPredicted RBP4.94□□□□□ -1.62
XRN1-209ENST00000472625 LPIN3Q9BQK8 851 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 CARD10Q9BWT7 1032 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 GGNBP2Q9H3C7 697 aa4.94□□□□□ -1.62
XRN1-209ENST00000472625 MAP3K5Q99683 1374 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 GOLGB1Q14789 3259 aaKnown RBP4.93□□□□□ -1.62
XRN1-209ENST00000472625 ZBTB7CA1YPR0 619 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 EXOC5O00471 708 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 TM4SF5O14894 197 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 RARAP10276 462 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 EIF1AXP47813 144 aaKnown RBP4.93□□□□□ -1.62
XRN1-209ENST00000472625 SERPINB4P48594 390 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 AFF1P51825 1210 aaKnown RBP4.93□□□□□ -1.62
XRN1-209ENST00000472625 RSPO4Q2I0M5 234 aaPredicted RBP4.93□□□□□ -1.62
XRN1-209ENST00000472625 DHX32Q7L7V1 743 aaKnown RBP4.93□□□□□ -1.62
XRN1-209ENST00000472625 FAM35AQ86V20 835 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 ARHGEF25Q86VW2 580 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 CMTR1Q8N1G2 835 aaKnown RBP4.93□□□□□ -1.62
XRN1-209ENST00000472625 MTFR1LQ9H019 292 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 CHRDQ9H2X0 955 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.93□□□□□ -1.622e-6■■■■■ 127.8
XRN1-209ENST00000472625 TMEM63CQ9P1W3 806 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 TTC21BQ7Z4L5 1316 aa4.93□□□□□ -1.62
XRN1-209ENST00000472625 KTN1Q86UP2 1357 aaKnown RBP4.92□□□□□ -1.62
XRN1-209ENST00000472625 PEAK1Q9H792 1746 aa4.92□□□□□ -1.62
XRN1-209ENST00000472625 A6NHS1 94 aa4.92□□□□□ -1.62
XRN1-209ENST00000472625 PDGFAP04085 211 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms