RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PODNQ7Z5L7 613 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 BANK1Q8NDB2 785 aa14.81□□□□□ -0.04
COL6A3-209ENST00000472056 EIF3CLB5ME19 914 aaKnown RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 FAM13AO94988 1023 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 OAS2P29728 719 aaKnown RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 EIF3CQ99613 913 aaKnown RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 SPZ1Q9BXG8 430 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 RBM8AQ9Y5S9 174 aaKnown RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 C8orf34Q49A92 452 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 TXNDC2Q86VQ3 553 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 DDX27Q96GQ7 796 aaKnown RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 TMX1Q9H3N1 280 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 SAR1BQ9Y6B6 198 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 TSPY3P0CV98 308 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 TSPY8P0CW00 308 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 RPAINQ86UA6 219 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 RABGGTAQ92696 567 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 POLR3AO14802 1390 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 KIF1CO43896 1103 aaKnown RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 IL15P40933 162 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 Q6ZUG5 572 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 ZNF622Q969S3 477 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 PSMD1Q99460 953 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 ZKSCAN3Q9BRR0 538 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 MRC2Q9UBG0 1479 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 CUTAO60888 179 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 LZTS2Q9BRK4 669 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 EIF3DO15371 548 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 APOBRQ0VD83 1088 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 SMTNP53814 917 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 NBPF9Q3BBW0 867 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 RRP36Q96EU6 259 aaKnown RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 ZC4H2Q9NQZ6 224 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 RNF216Q9NWF9 866 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-209ENST00000472056 KDM5DQ9BY66 1539 aa14.8□□□□□ -0.04
COL6A3-209ENST00000472056 ESRRGP62508 458 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 HHATQ5VTY9 493 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 E7EVH7 732 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 SMARCA5O60264 1052 aaPredicted RBP14.79□□□□□ -0.04
COL6A3-209ENST00000472056 BBOF1Q8ND07 529 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 RHPN1Q8TCX5 695 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 SDCCAG3Q96C92 435 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 CCDC169A6NNP5 214 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 WDR44Q5JSH3 913 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 HAUS1Q96CS2 278 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 CNOT10Q9H9A5 744 aaKnown RBP14.79□□□□□ -0.04
COL6A3-209ENST00000472056 KIF24Q5T7B8 1368 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 CACYBPQ9HB71 228 aaKnown RBP14.79□□□□□ -0.04
COL6A3-209ENST00000472056 PDE1CQ14123 709 aaPredicted RBP14.79□□□□□ -0.04
COL6A3-209ENST00000472056 CCDC68Q9H2F9 335 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 CLSTN2Q9H4D0 955 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 RGS16O15492 202 aaPredicted RBP14.79□□□□□ -0.04
COL6A3-209ENST00000472056 C20orf194Q5TEA3 1177 aa14.79□□□□□ -0.04
COL6A3-209ENST00000472056 CCDC124Q96CT7 223 aaKnown RBP14.79□□□□□ -0.04
COL6A3-209ENST00000472056 CDC25BP30305 580 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 DBN1Q16643 649 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 SV2BQ7L1I2 683 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 BRF1Q92994 677 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 ZNF830Q96NB3 372 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-209ENST00000472056 AGTPBP1Q9UPW5 1226 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 DKC1O60832 514 aaKnown RBP eCLIP14.78□□□□□ -0.04
COL6A3-209ENST00000472056 DCTPP1Q9H773 170 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 PNMA8AQ86V59 439 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-209ENST00000472056 TRIML1Q8N9V2 468 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 TOPBP1Q92547 1522 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 NUTM2BA6NNL0 878 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-209ENST00000472056 NUTM2EB1AL46 878 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-209ENST00000472056 TRIM42Q8IWZ5 723 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 CCHCR1Q8TD31 782 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 TLDC2A0PJX2 215 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 TMEM87AQ8NBN3 555 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 KIF11P52732 1056 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 NAA16Q6N069 864 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-209ENST00000472056 TMEM87BQ96K49 555 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 PRDM11Q9NQV5 511 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 KIAA0586Q9BVV6 1533 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 MAP3K7CLP57077 242 aa14.78□□□□□ -0.04
COL6A3-209ENST00000472056 GFM2Q969S9 779 aaKnown RBP14.78□□□□□ -0.04
COL6A3-209ENST00000472056 SPOPO43791 374 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 SH3BP5O60239 455 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 SUN1O94901 812 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 PDE6BP35913 854 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 STAG1Q8WVM7 1258 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 CAPS2Q9BXY5 557 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 WWC3Q9ULE0 1092 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 ELF2Q15723 593 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 RPGRQ92834 1020 aaKnown RBP14.77□□□□□ -0.04
COL6A3-209ENST00000472056 RBSNQ9H1K0 784 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 EXOC7Q9UPT5 735 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 KDM2BQ8NHM5 1336 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 PSDA5PKW4 1024 aaPredicted RBP14.77□□□□□ -0.04
COL6A3-209ENST00000472056 CENPKQ9BS16 269 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 FAM204AQ9H8W3 233 aa14.77□□□□□ -0.04
COL6A3-209ENST00000472056 GEN1Q17RS7 908 aa14.77□□□□□ -0.05
COL6A3-209ENST00000472056 OSCARQ8IYS5 282 aa14.77□□□□□ -0.05
COL6A3-209ENST00000472056 NUDT16Q96DE0 195 aaKnown RBP14.77□□□□□ -0.05
COL6A3-209ENST00000472056 THAP12O43422 761 aa14.77□□□□□ -0.05
COL6A3-209ENST00000472056 COG7P83436 770 aa14.77□□□□□ -0.05
COL6A3-209ENST00000472056 CDAN1Q8IWY9 1227 aa14.77□□□□□ -0.05
COL6A3-209ENST00000472056 BABAM1Q9NWV8 329 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms