RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 PICK1Q9NRD5 415 aa6.61□□□□□ -1.35
PRPF40A-207ENST00000471701 TIMELESSQ9UNS1 1208 aa6.61□□□□□ -1.35
PRPF40A-207ENST00000471701 ATP2B2Q01814 1243 aa6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 ZC3H12AQ5D1E8 599 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 RNF214Q8ND24 703 aa6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 NETO1Q8TDF5 533 aa6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 STK35Q8TDR2 534 aa6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 MISP3Q96FF7 219 aa6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 ASIC4Q96FT7 647 aa6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 NECAB3Q96P71 396 aaPredicted RBP6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 PAK6Q9NQU5 681 aaPredicted RBP6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 PCDHGC5Q9Y5F6 944 aa6.6□□□□□ -1.35
PRPF40A-207ENST00000471701 ERVK-24P63145 666 aa6.59□□□□□ -1.35
PRPF40A-207ENST00000471701 LRRC14Q15048 493 aa6.59□□□□□ -1.35
PRPF40A-207ENST00000471701 TPTE2Q6XPS3 522 aa6.59□□□□□ -1.35
PRPF40A-207ENST00000471701 GPBAR1Q8TDU6 330 aa6.59□□□□□ -1.35
PRPF40A-207ENST00000471701 BCL7CQ8WUZ0 217 aaPredicted RBP6.59□□□□□ -1.35
PRPF40A-207ENST00000471701 KRTAP4-12Q9BQ66 201 aa6.59□□□□□ -1.35
PRPF40A-207ENST00000471701 IVNS1ABPQ9Y6Y0 642 aa6.59□□□□□ -1.35
PRPF40A-207ENST00000471701 YBX3P16989 372 aaKnown RBP eCLIP6.58□□□□□ -1.36
PRPF40A-207ENST00000471701 KCNA1Q09470 495 aa6.58□□□□□ -1.36
PRPF40A-207ENST00000471701 ASB16Q96NS5 453 aa6.58□□□□□ -1.36
PRPF40A-207ENST00000471701 VAV3Q9UKW4 847 aa6.58□□□□□ -1.36
PRPF40A-207ENST00000471701 SPG7Q9UQ90 795 aa6.58□□□□□ -1.36
PRPF40A-207ENST00000471701 JUNBP17275 347 aaPredicted RBP6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 BMP6P22004 513 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 ZNF252P-AS1Q0IIN9 211 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 BNIP3Q12983 259 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 PLCL1Q15111 1095 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 NFXL1Q6ZNB6 911 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 CBLL1Q75N03 491 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 CDC37L1Q7L3B6 337 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 PLD6Q8N2A8 252 aaKnown RBP6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 C3orf58Q8NDZ4 430 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 ISL2Q96A47 359 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 DUSP23Q9BVJ7 150 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 OSBPL7Q9BZF2 842 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 MKNK2Q9HBH9 465 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 PPM1HQ9ULR3 514 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 CSADQ9Y600 493 aa6.57□□□□□ -1.36
PRPF40A-207ENST00000471701 BIN1O00499 593 aa6.56□□□□□ -1.36
PRPF40A-207ENST00000471701 LEFTY1O75610 366 aa6.56□□□□□ -1.36
PRPF40A-207ENST00000471701 TRIM37O94972 964 aa6.56□□□□□ -1.36
PRPF40A-207ENST00000471701 LCE3BQ5TA77 95 aa6.56□□□□□ -1.36
PRPF40A-207ENST00000471701 KRTAP1-3Q8IUG1 177 aa6.56□□□□□ -1.36
PRPF40A-207ENST00000471701 FAM181AQ8N9Y4 354 aa6.56□□□□□ -1.36
PRPF40A-207ENST00000471701 GRIN3AQ8TCU5 1115 aa6.56□□□□□ -1.36
PRPF40A-207ENST00000471701 WWC3Q9ULE0 1092 aa6.56□□□□□ -1.36
PRPF40A-207ENST00000471701 CYP8B1Q9UNU6 501 aa6.56□□□□□ -1.36
PRPF40A-207ENST00000471701 TMEM265A0A087WTH1 108 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 DCDC2CA8MYV0 355 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 NEFMP07197 916 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 PRKCQQ04759 706 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 FMR1Q06787 632 aaKnown RBP eCLIP6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 COL19A1Q14993 1142 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 IFI16Q16666 785 aaKnown RBP6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 PPM1JQ5JR12 505 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 LLGL2Q6P1M3 1020 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 MPRIPQ6WCQ1 1025 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 SPRED2Q7Z698 418 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 C12orf40Q86WS4 652 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 TOP6BLQ8N6T0 577 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 GTF2IRD1Q9UHL9 959 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 PCDHA4Q9UN74 947 aa6.55□□□□□ -1.36
PRPF40A-207ENST00000471701 PATL2C9JE40 543 aaKnown RBP6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 ENC1O14682 589 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 FBXO24O75426 580 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 AOC3Q16853 763 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 SCARA3Q6AZY7 606 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 ZNF574Q6ZN55 896 aaPredicted RBP6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 KCT2Q8NC54 265 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 PI4K2BQ8TCG2 481 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 ELMO3Q96BJ8 720 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 HRASLS5Q96KN8 279 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 FRMD6Q96NE9 622 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 CACNA2D2Q9NY47 1150 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 FAM8A1Q9UBU6 413 aa6.54□□□□□ -1.36
PRPF40A-207ENST00000471701 FANCGO15287 622 aa6.53□□□□□ -1.36
PRPF40A-207ENST00000471701 PAGE1O75459 146 aa6.53□□□□□ -1.36
PRPF40A-207ENST00000471701 CD8BP10966 210 aa6.53□□□□□ -1.36
PRPF40A-207ENST00000471701 OXCT1P55809 520 aa6.53□□□□□ -1.36
PRPF40A-207ENST00000471701 ZNF792Q3KQV3 632 aa6.53□□□□□ -1.36
PRPF40A-207ENST00000471701 SETDB2Q96T68 719 aa6.53□□□□□ -1.36
PRPF40A-207ENST00000471701 C12orf49Q9H741 205 aa6.53□□□□□ -1.36
PRPF40A-207ENST00000471701 SNX11Q9Y5W9 270 aa6.53□□□□□ -1.36
PRPF40A-207ENST00000471701 CEACAM5P06731 702 aa6.52□□□□□ -1.37
PRPF40A-207ENST00000471701 LDHBP07195 334 aaKnown RBP6.52□□□□□ -1.37
PRPF40A-207ENST00000471701 ZNF507Q8TCN5 953 aa6.52□□□□□ -1.37
PRPF40A-207ENST00000471701 ANKRD24Q8TF21 1146 aa6.52□□□□□ -1.37
PRPF40A-207ENST00000471701 PRDM10Q9NQV6 1147 aa6.52□□□□□ -1.37
PRPF40A-207ENST00000471701 BTBD11A6QL63 1104 aa6.51□□□□□ -1.37
PRPF40A-207ENST00000471701 USP17L7P0C7H9 530 aa6.51□□□□□ -1.37
PRPF40A-207ENST00000471701 ITGB5P18084 799 aa6.51□□□□□ -1.37
PRPF40A-207ENST00000471701 ITIH2P19823 946 aa6.51□□□□□ -1.37
PRPF40A-207ENST00000471701 LMNB1P20700 586 aa6.51□□□□□ -1.37
PRPF40A-207ENST00000471701 FUT4P22083 530 aa6.51□□□□□ -1.37
PRPF40A-207ENST00000471701 FGD1P98174 961 aa6.51□□□□□ -1.37
PRPF40A-207ENST00000471701 KRTAP19-1Q8IUB9 90 aa6.51□□□□□ -1.37
PRPF40A-207ENST00000471701 TTF2Q9UNY4 1162 aaKnown RBP6.51□□□□□ -1.37
PRPF40A-207ENST00000471701 IGF2BP3O00425 579 aaKnown RBP eCLIP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms