RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 SOX17Q9H6I2 414 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-210ENST00000471439 WWC3Q9ULE0 1092 aa6.81□□□□□ -1.32
VPS13A-210ENST00000471439 CEP170BQ9Y4F5 1589 aaPredicted RBP6.81□□□□□ -1.32
VPS13A-210ENST00000471439 XIRP1Q702N8 1843 aaKnown RBP6.8□□□□□ -1.32
VPS13A-210ENST00000471439 PHLPP1O60346 1717 aa6.8□□□□□ -1.32
VPS13A-210ENST00000471439 ABCA8O94911 1581 aa6.8□□□□□ -1.32
VPS13A-210ENST00000471439 B3GALT4O96024 378 aa6.8□□□□□ -1.32
VPS13A-210ENST00000471439 FSTP19883 344 aa6.8□□□□□ -1.32
VPS13A-210ENST00000471439 MAOBP27338 520 aa6.8□□□□□ -1.32
VPS13A-210ENST00000471439 MFAP1P55081 439 aaKnown RBP6.8□□□□□ -1.32
VPS13A-210ENST00000471439 NPATQ14207 1427 aa6.8□□□□□ -1.32
VPS13A-210ENST00000471439 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.8□□□□□ -1.32
VPS13A-210ENST00000471439 MYRFLQ96LU7 910 aa6.8□□□□□ -1.32
VPS13A-210ENST00000471439 TMPRSS13Q9BYE2 586 aa6.8□□□□□ -1.32
VPS13A-210ENST00000471439 RAXQ9Y2V3 346 aa6.8□□□□□ -1.32
VPS13A-210ENST00000471439 BCL9LQ86UU0 1499 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 SYNMO15061 1565 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 TMEM238LA0A1B0GVL6 79 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 SCO2A0A1W2PP80 73 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 HMX2A2RU54 273 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 MAPK8P45983 427 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 FCGRTP55899 365 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 RBM6P78332 1123 aaKnown RBP6.79□□□□□ -1.32
VPS13A-210ENST00000471439 ENOX2Q16206 610 aaKnown RBP6.79□□□□□ -1.32
VPS13A-210ENST00000471439 SGO2Q562F6 1265 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 FDX2Q6P4F2 183 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 TRIM42Q8IWZ5 723 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 C7orf69Q9H7B7 122 aa6.79□□□□□ -1.32
VPS13A-210ENST00000471439 CDK13Q14004 1512 aaKnown RBP6.79□□□□□ -1.32
VPS13A-210ENST00000471439 TIAF1O95411 115 aa6.78□□□□□ -1.32
VPS13A-210ENST00000471439 BMP3P12645 472 aa6.78□□□□□ -1.32
VPS13A-210ENST00000471439 FMR1Q06787 632 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS13A-210ENST00000471439 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS13A-210ENST00000471439 ANKRD34AQ69YU3 496 aa6.78□□□□□ -1.32
VPS13A-210ENST00000471439 FAM20CQ8IXL6 584 aa6.78□□□□□ -1.32
VPS13A-210ENST00000471439 BCO2Q9BYV7 579 aa6.78□□□□□ -1.32
VPS13A-210ENST00000471439 IQGAP2Q13576 1575 aa6.78□□□□□ -1.32
VPS13A-210ENST00000471439 DHX15O43143 795 aaKnown RBP6.77□□□□□ -1.33
VPS13A-210ENST00000471439 P4HBP07237 508 aaKnown RBP6.77□□□□□ -1.33
VPS13A-210ENST00000471439 NUTM2GQ5VZR2 741 aa6.77□□□□□ -1.33
VPS13A-210ENST00000471439 NXPE4Q6UWF7 544 aa6.77□□□□□ -1.33
VPS13A-210ENST00000471439 C12orf50Q8NA57 414 aaPredicted RBP6.77□□□□□ -1.33
VPS13A-210ENST00000471439 ASB16Q96NS5 453 aa6.77□□□□□ -1.33
VPS13A-210ENST00000471439 KCNF1Q9H3M0 494 aa6.77□□□□□ -1.33
VPS13A-210ENST00000471439 STOML1Q9UBI4 398 aa6.77□□□□□ -1.33
VPS13A-210ENST00000471439 CCDC9Q9Y3X0 531 aaKnown RBP6.77□□□□□ -1.33
VPS13A-210ENST00000471439 AFF2P51816 1311 aa6.76□□□□□ -1.33
VPS13A-210ENST00000471439 MEGF11A6BM72 1044 aa6.76□□□□□ -1.33
VPS13A-210ENST00000471439 SART1O43290 800 aaKnown RBP6.76□□□□□ -1.33
VPS13A-210ENST00000471439 PLCB3Q01970 1234 aa6.76□□□□□ -1.33
VPS13A-210ENST00000471439 POU4F3Q15319 338 aa6.76□□□□□ -1.33
VPS13A-210ENST00000471439 CCDC27Q2M243 656 aa6.76□□□□□ -1.33
VPS13A-210ENST00000471439 UVSSAQ2YD98 709 aa6.76□□□□□ -1.33
VPS13A-210ENST00000471439 DEFB132Q7Z7B7 95 aa6.76□□□□□ -1.33
VPS13A-210ENST00000471439 SHISA5Q8N114 240 aa6.76□□□□□ -1.33
VPS13A-210ENST00000471439 C2CD4AQ8NCU7 369 aaPredicted RBP6.76□□□□□ -1.33
VPS13A-210ENST00000471439 ZC3H12CQ9C0D7 883 aaKnown RBP6.76□□□□□ -1.33
VPS13A-210ENST00000471439 SPATA31A6Q5VVP1 1343 aa6.76□□□□□ -1.33
VPS13A-210ENST00000471439 CAMTA1Q9Y6Y1 1673 aa6.75□□□□□ -1.33
VPS13A-210ENST00000471439 GAS2O43903 313 aaKnown RBP6.75□□□□□ -1.33
VPS13A-210ENST00000471439 ADH5P11766 374 aa6.75□□□□□ -1.33
VPS13A-210ENST00000471439 CDPF1Q6NVV7 123 aa6.75□□□□□ -1.33
VPS13A-210ENST00000471439 DTHD1Q6ZMT9 781 aa6.75□□□□□ -1.33
VPS13A-210ENST00000471439 BEND4Q6ZU67 534 aa6.75□□□□□ -1.33
VPS13A-210ENST00000471439 SMG8Q8ND04 991 aaKnown RBP6.75□□□□□ -1.33
VPS13A-210ENST00000471439 STK35Q8TDR2 534 aa6.75□□□□□ -1.33
VPS13A-210ENST00000471439 SUGCTQ9HAC7 445 aa6.75□□□□□ -1.33
VPS13A-210ENST00000471439 RNF19AQ9NV58 838 aa6.75□□□□□ -1.33
VPS13A-210ENST00000471439 NLRP2Q9NX02 1062 aa6.75□□□□□ -1.33
VPS13A-210ENST00000471439 DNMT1P26358 1616 aaKnown RBP6.75□□□□□ -1.33
VPS13A-210ENST00000471439 NWD1Q149M9 1564 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 FBXO24O75426 580 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 TGFB1P01137 390 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 IGLV1-40P01703 118 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 NFIAQ12857 509 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 AKAP4Q5JQC9 854 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 EXOSC6Q5RKV6 272 aaKnown RBP6.74□□□□□ -1.33
VPS13A-210ENST00000471439 DNAJC14Q6Y2X3 702 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-210ENST00000471439 C3orf58Q8NDZ4 430 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 RGS22Q8NE09 1264 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 WDR89Q96FK6 387 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-210ENST00000471439 OSBPL7Q9BZF2 842 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 GPN3Q9UHW5 284 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-210ENST00000471439 TRAK1Q9UPV9 953 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 ACTL7BQ9Y614 415 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 CHD4Q14839 1912 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 KDM5CP41229 1560 aa6.74□□□□□ -1.33
VPS13A-210ENST00000471439 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.73□□□□□ -1.33
VPS13A-210ENST00000471439 MAP4P27816 1152 aaKnown RBP6.73□□□□□ -1.33
VPS13A-210ENST00000471439 PTPN12Q05209 780 aaKnown RBP6.73□□□□□ -1.33
VPS13A-210ENST00000471439 SOX4Q06945 474 aaPredicted RBP6.73□□□□□ -1.33
VPS13A-210ENST00000471439 ARTNQ5T4W7 220 aa6.73□□□□□ -1.33
VPS13A-210ENST00000471439 FBLIM1Q8WUP2 373 aa6.73□□□□□ -1.33
VPS13A-210ENST00000471439 CORO1BQ9BR76 489 aa6.73□□□□□ -1.33
VPS13A-210ENST00000471439 CCDC86Q9H6F5 360 aaKnown RBP6.73□□□□□ -1.33
VPS13A-210ENST00000471439 CYP4F12Q9HCS2 524 aa6.73□□□□□ -1.33
VPS13A-210ENST00000471439 AKAP2Q9Y2D5 859 aa6.73□□□□□ -1.33
VPS13A-210ENST00000471439 MROH2AA6NES4 1674 aa6.73□□□□□ -1.33
VPS13A-210ENST00000471439 CFAP74Q9C0B2 1584 aa6.73□□□□□ -1.33
VPS13A-210ENST00000471439 COL16A1Q07092 1604 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms