RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 ERC1Q8IUD2 1116 aa16.56■□□□□ 0.24
HMGN1-211ENST00000471260 CHMP4BQ9H444 224 aaKnown RBP16.56■□□□□ 0.24
HMGN1-211ENST00000471260 ZFYVE28Q9HCC9 887 aa16.56■□□□□ 0.24
HMGN1-211ENST00000471260 LRP2BPQ9P2M1 347 aa16.56■□□□□ 0.24
HMGN1-211ENST00000471260 HPS5Q9UPZ3 1129 aa16.56■□□□□ 0.24
HMGN1-211ENST00000471260 AK9Q5TCS8 1911 aa16.56■□□□□ 0.24
HMGN1-211ENST00000471260 INPP5BP32019 993 aa16.55■□□□□ 0.24
HMGN1-211ENST00000471260 SP3Q02447 781 aa16.55■□□□□ 0.24
HMGN1-211ENST00000471260 MLLT1Q03111 559 aaPredicted RBP16.55■□□□□ 0.24
HMGN1-211ENST00000471260 HSP90AB4PQ58FF6 505 aa16.55■□□□□ 0.24
HMGN1-211ENST00000471260 PI16Q6UXB8 463 aa16.55■□□□□ 0.24
HMGN1-211ENST00000471260 PANK1Q8TE04 598 aa16.55■□□□□ 0.24
HMGN1-211ENST00000471260 ZNF384Q8TF68 577 aa16.55■□□□□ 0.24
HMGN1-211ENST00000471260 RAI14Q9P0K7 980 aa16.55■□□□□ 0.24
HMGN1-211ENST00000471260 ATRNL1Q5VV63 1379 aa16.54■□□□□ 0.24
HMGN1-211ENST00000471260 RHBDL3P58872 404 aa16.54■□□□□ 0.24
HMGN1-211ENST00000471260 ARHGEF6Q15052 776 aa16.54■□□□□ 0.24
HMGN1-211ENST00000471260 TAF1CQ15572 869 aaPredicted RBP16.54■□□□□ 0.24
HMGN1-211ENST00000471260 TBC1D9Q6ZT07 1266 aa16.54■□□□□ 0.24
HMGN1-211ENST00000471260 ZSCAN29Q8IWY8 852 aaPredicted RBP16.54■□□□□ 0.24
HMGN1-211ENST00000471260 ZFPM1Q8IX07 1006 aa16.54■□□□□ 0.24
HMGN1-211ENST00000471260 FAM43AQ8N2R8 423 aa16.54■□□□□ 0.24
HMGN1-211ENST00000471260 DBNDD2Q9BQY9 259 aa16.54■□□□□ 0.24
HMGN1-211ENST00000471260 DDX19BQ9UMR2 479 aa16.54■□□□□ 0.24
HMGN1-211ENST00000471260 KCNH4Q9UQ05 1017 aa16.54■□□□□ 0.24
HMGN1-211ENST00000471260 TBC1D12O60347 775 aa16.53■□□□□ 0.24
HMGN1-211ENST00000471260 OTOP1Q7RTM1 612 aa16.53■□□□□ 0.24
HMGN1-211ENST00000471260 RPAP2Q8IXW5 612 aaPredicted RBP16.53■□□□□ 0.24
HMGN1-211ENST00000471260 TRIM17Q9Y577 477 aa16.53■□□□□ 0.24
HMGN1-211ENST00000471260 DDTLA6NHG4 134 aaPredicted RBP16.52■□□□□ 0.24
HMGN1-211ENST00000471260 PHF20L1A8MW92 1017 aa16.52■□□□□ 0.24
HMGN1-211ENST00000471260 BTBD19C9JJ37 291 aa16.52■□□□□ 0.24
HMGN1-211ENST00000471260 BAG3O95817 575 aa16.52■□□□□ 0.24
HMGN1-211ENST00000471260 PICALMQ13492 652 aa16.52■□□□□ 0.24
HMGN1-211ENST00000471260 TMED8Q6PL24 325 aaPredicted RBP16.52■□□□□ 0.24
HMGN1-211ENST00000471260 SH3BP5LQ7L8J4 393 aa16.52■□□□□ 0.24
HMGN1-211ENST00000471260 NOL10Q9BSC4 688 aaKnown RBP16.52■□□□□ 0.24
HMGN1-211ENST00000471260 DDX4Q9NQI0 724 aaKnown RBP16.52■□□□□ 0.24
HMGN1-211ENST00000471260 RCAN3Q9UKA8 241 aa16.52■□□□□ 0.24
HMGN1-211ENST00000471260 COL2A1P02458 1487 aaPredicted RBP16.51■□□□□ 0.23
HMGN1-211ENST00000471260 CXCL11O14625 94 aa16.51■□□□□ 0.23
HMGN1-211ENST00000471260 TLR2O60603 784 aa16.51■□□□□ 0.23
HMGN1-211ENST00000471260 CTNND1O60716 968 aaKnown RBP16.51■□□□□ 0.23
HMGN1-211ENST00000471260 HMMRO75330 724 aa16.51■□□□□ 0.23
HMGN1-211ENST00000471260 PLCG2P16885 1265 aa16.51■□□□□ 0.23
HMGN1-211ENST00000471260 NAA16Q6N069 864 aaPredicted RBP16.51■□□□□ 0.23
HMGN1-211ENST00000471260 ANKRD23Q86SG2 305 aa16.51■□□□□ 0.23
HMGN1-211ENST00000471260 SCYL3Q8IZE3 742 aa16.51■□□□□ 0.23
HMGN1-211ENST00000471260 EAF2Q96CJ1 260 aaPredicted RBP16.51■□□□□ 0.23
HMGN1-211ENST00000471260 EFCC1Q9HA90 598 aa16.51■□□□□ 0.23
HMGN1-211ENST00000471260 PICK1Q9NRD5 415 aa16.51■□□□□ 0.23
HMGN1-211ENST00000471260 DBNLQ9UJU6 430 aaKnown RBP16.51■□□□□ 0.23
HMGN1-211ENST00000471260 DOCK2Q92608 1830 aa16.5■□□□□ 0.23
HMGN1-211ENST00000471260 CYP2E1P05181 493 aaPredicted RBP16.5■□□□□ 0.23
HMGN1-211ENST00000471260 PPP4CP60510 307 aa16.5■□□□□ 0.23
HMGN1-211ENST00000471260 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.5■□□□□ 0.23
HMGN1-211ENST00000471260 CD99L2Q8TCZ2 262 aa16.5■□□□□ 0.23
HMGN1-211ENST00000471260 SNRKQ9NRH2 765 aa16.5■□□□□ 0.23
HMGN1-211ENST00000471260 ZBTB40Q9NUA8 1239 aa16.5■□□□□ 0.23
HMGN1-211ENST00000471260 PTPN22Q9Y2R2 807 aa16.5■□□□□ 0.23
HMGN1-211ENST00000471260 PTPRAP18433 802 aa16.49■□□□□ 0.23
HMGN1-211ENST00000471260 CERS3Q8IU89 383 aa16.49■□□□□ 0.23
HMGN1-211ENST00000471260 TEX11Q8IYF3 940 aa16.49■□□□□ 0.23
HMGN1-211ENST00000471260 CCDC8Q9H0W5 538 aaPredicted RBP16.49■□□□□ 0.23
HMGN1-211ENST00000471260 OSBPL5Q9H0X9 879 aaPredicted RBP16.49■□□□□ 0.23
HMGN1-211ENST00000471260 DHX36Q9H2U1 1008 aaKnown RBP16.49■□□□□ 0.23
HMGN1-211ENST00000471260 EXOC6BQ9Y2D4 811 aa16.49■□□□□ 0.23
HMGN1-211ENST00000471260 COG6Q9Y2V7 657 aa16.49■□□□□ 0.23
HMGN1-211ENST00000471260 GNRH1P01148 92 aa16.48■□□□□ 0.23
HMGN1-211ENST00000471260 ZAP70P43403 619 aa16.48■□□□□ 0.23
HMGN1-211ENST00000471260 PDE3AQ14432 1141 aa16.48■□□□□ 0.23
HMGN1-211ENST00000471260 FASTKD5Q7L8L6 764 aaKnown RBP16.48■□□□□ 0.23
HMGN1-211ENST00000471260 RHPN1Q8TCX5 695 aa16.48■□□□□ 0.23
HMGN1-211ENST00000471260 TBC1D2Q9BYX2 928 aa16.48■□□□□ 0.23
HMGN1-211ENST00000471260 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.48■□□□□ 0.23
HMGN1-211ENST00000471260 ZHX2Q9Y6X8 837 aa16.48■□□□□ 0.23
HMGN1-211ENST00000471260 KIF22Q14807 665 aa16.47■□□□□ 0.23
HMGN1-211ENST00000471260 CLASRPQ8N2M8 674 aaKnown RBP16.47■□□□□ 0.23
HMGN1-211ENST00000471260 KIF1BPQ96EK5 621 aa16.47■□□□□ 0.23
HMGN1-211ENST00000471260 TSHZ2Q9NRE2 1034 aa16.47■□□□□ 0.23
HMGN1-211ENST00000471260 AATFQ9NY61 560 aaKnown RBP eCLIP16.47■□□□□ 0.23
HMGN1-211ENST00000471260 TLR7Q9NYK1 1049 aaKnown RBP16.47■□□□□ 0.23
HMGN1-211ENST00000471260 PI4KBQ9UBF8 816 aa16.47■□□□□ 0.23
HMGN1-211ENST00000471260 HERC5Q9UII4 1024 aaKnown RBP16.47■□□□□ 0.23
HMGN1-211ENST00000471260 AFG3L2Q9Y4W6 797 aa16.47■□□□□ 0.23
HMGN1-211ENST00000471260 A0A0G2JLL6 359 aaPredicted RBP16.46■□□□□ 0.23
HMGN1-211ENST00000471260 PDHXO00330 501 aa16.46■□□□□ 0.23
HMGN1-211ENST00000471260 RAB11FIP3O75154 756 aa16.46■□□□□ 0.23
HMGN1-211ENST00000471260 SOX10P56693 466 aa16.46■□□□□ 0.23
HMGN1-211ENST00000471260 MOGSQ13724 837 aa16.46■□□□□ 0.23
HMGN1-211ENST00000471260 PRRT2Q7Z6L0 340 aaPredicted RBP16.46■□□□□ 0.23
HMGN1-211ENST00000471260 AACSQ86V21 672 aa16.46■□□□□ 0.23
HMGN1-211ENST00000471260 SH3RF3Q8TEJ3 882 aaPredicted RBP16.46■□□□□ 0.23
HMGN1-211ENST00000471260 SLC45A1Q9Y2W3 748 aa16.46■□□□□ 0.23
HMGN1-211ENST00000471260 LACTBP83111 547 aaPredicted RBP16.45■□□□□ 0.22
HMGN1-211ENST00000471260 MAP3K12Q12852 859 aa16.45■□□□□ 0.22
HMGN1-211ENST00000471260 C17orf99Q6UX52 265 aa16.45■□□□□ 0.22
HMGN1-211ENST00000471260 FOXP4Q8IVH2 680 aaPredicted RBP16.45■□□□□ 0.22
HMGN1-211ENST00000471260 PIH1D3Q9NQM4 214 aaKnown RBP16.45■□□□□ 0.22
HMGN1-211ENST00000471260 MAST2Q6P0Q8 1798 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms