RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 NBPF4Q96M43 638 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 C8orf37Q96NL8 207 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 PRDM6Q9NQX0 595 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 IFT57Q9NWB7 429 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 MAP2P11137 1827 aaKnown RBP7.49□□□□□ -1.21
SYNE1-219ENST00000469439 NCAPD2Q15021 1401 aa7.49□□□□□ -1.21
SYNE1-219ENST00000469439 K7ELQ4 463 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-219ENST00000469439 M0R082 166 aa7.48□□□□□ -1.21
SYNE1-219ENST00000469439 ALBP02768 609 aa7.48□□□□□ -1.21
SYNE1-219ENST00000469439 SPATA31C1P0DKV0 1188 aa7.48□□□□□ -1.21
SYNE1-219ENST00000469439 LMOD1P29536 600 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-219ENST00000469439 RTN1Q16799 776 aa7.48□□□□□ -1.21
SYNE1-219ENST00000469439 ZNF530Q6P9A1 599 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-219ENST00000469439 ZNF417Q8TAU3 575 aa7.48□□□□□ -1.21
SYNE1-219ENST00000469439 ZNF587Q96SQ5 575 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-219ENST00000469439 USP21Q9UK80 565 aa7.48□□□□□ -1.21
SYNE1-219ENST00000469439 COL16A1Q07092 1604 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-219ENST00000469439 FAM208AQ9UK61 1670 aaKnown RBP7.47□□□□□ -1.21
SYNE1-219ENST00000469439 MAP3K5Q99683 1374 aa7.47□□□□□ -1.21
SYNE1-219ENST00000469439 COL14A1Q05707 1796 aaKnown RBP7.47□□□□□ -1.21
SYNE1-219ENST00000469439 TAF7Q15545 349 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-219ENST00000469439 ARXQ96QS3 562 aa7.47□□□□□ -1.21
SYNE1-219ENST00000469439 HINFPQ9BQA5 517 aa7.47□□□□□ -1.21
SYNE1-219ENST00000469439 CHMP4BQ9H444 224 aaKnown RBP7.47□□□□□ -1.21
SYNE1-219ENST00000469439 VRTNQ9H8Y1 702 aa7.47□□□□□ -1.21
SYNE1-219ENST00000469439 COL5A2P05997 1499 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-219ENST00000469439 SHPRHQ149N8 1683 aa7.47□□□□□ -1.21
SYNE1-219ENST00000469439 OVOS2A0A0G2JMS6 1433 aa7.46□□□□□ -1.21
SYNE1-219ENST00000469439 ERVV-2B6SEH9 535 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 TGFBR3LH3BV60 316 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 LGR5O75473 907 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 DDB1Q16531 1140 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 C20orf204Q6ZNR8 217 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 MICALL1Q8N3F8 863 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 BHMTQ93088 406 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 BCS1LQ9Y276 419 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 SPATA31A5Q5VU36 1347 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 SPATA31A7Q8IWB4 1347 aa7.46□□□□□ -1.22
SYNE1-219ENST00000469439 SPDYE3A6NKU9 549 aa7.45□□□□□ -1.22
SYNE1-219ENST00000469439 IPO8O15397 1037 aaKnown RBP7.45□□□□□ -1.22
SYNE1-219ENST00000469439 HOXB7P09629 217 aa7.45□□□□□ -1.22
SYNE1-219ENST00000469439 FURINP09958 794 aa7.45□□□□□ -1.22
SYNE1-219ENST00000469439 NID1P14543 1247 aa7.45□□□□□ -1.22
SYNE1-219ENST00000469439 SLFN5Q08AF3 891 aa7.45□□□□□ -1.22
SYNE1-219ENST00000469439 MTHFSDQ2M296 383 aaKnown RBP7.45□□□□□ -1.22
SYNE1-219ENST00000469439 C8orf86Q6ZUL3 223 aa7.45□□□□□ -1.22
SYNE1-219ENST00000469439 TTC5Q8N0Z6 440 aa7.45□□□□□ -1.22
SYNE1-219ENST00000469439 EFCC1Q9HA90 598 aa7.45□□□□□ -1.22
SYNE1-219ENST00000469439 DMGDHQ9UI17 866 aaKnown RBP7.45□□□□□ -1.22
SYNE1-219ENST00000469439 SPATA31A1Q5TZJ5 1347 aa7.45□□□□□ -1.22
SYNE1-219ENST00000469439 SLIT2O94813 1529 aa7.44□□□□□ -1.22
SYNE1-219ENST00000469439 WEE1P30291 646 aa7.44□□□□□ -1.22
SYNE1-219ENST00000469439 CABP4P57796 275 aa7.44□□□□□ -1.22
SYNE1-219ENST00000469439 ERICH6BQ5W0A0 696 aa7.44□□□□□ -1.22
SYNE1-219ENST00000469439 AEBP1Q8IUX7 1158 aa7.44□□□□□ -1.22
SYNE1-219ENST00000469439 PHACTR3Q96KR7 559 aa7.44□□□□□ -1.22
SYNE1-219ENST00000469439 TEX13AQ9BXU3 409 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-219ENST00000469439 USP35Q9P2H5 1018 aa7.44□□□□□ -1.22
SYNE1-219ENST00000469439 TSPYL4Q9UJ04 414 aa7.44□□□□□ -1.22
SYNE1-219ENST00000469439 ZNF521Q96K83 1311 aa7.44□□□□□ -1.22
SYNE1-219ENST00000469439 LTN1O94822 1766 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 CHL1O00533 1208 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 PHKG2P15735 406 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 GRNP28799 593 aaKnown RBP7.43□□□□□ -1.22
SYNE1-219ENST00000469439 RBM6P78332 1123 aaKnown RBP7.43□□□□□ -1.22
SYNE1-219ENST00000469439 AAMPQ13685 434 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 PRRT3Q5FWE3 981 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 XP32Q5T750 250 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 NPM2Q86SE8 214 aaKnown RBP7.43□□□□□ -1.22
SYNE1-219ENST00000469439 USHBP1Q8N6Y0 703 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 SMARCC1Q92922 1105 aaPredicted RBP7.43□□□□□ -1.22
SYNE1-219ENST00000469439 STK31Q9BXU1 1019 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 GSX2Q9BZM3 304 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 QTRT2Q9H974 415 aaKnown RBP7.43□□□□□ -1.22
SYNE1-219ENST00000469439 SLC6A14Q9UN76 642 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 RRP7AQ9Y3A4 280 aaKnown RBP7.43□□□□□ -1.22
SYNE1-219ENST00000469439 LAS1LQ9Y4W2 734 aaKnown RBP7.43□□□□□ -1.22
SYNE1-219ENST00000469439 CAMTA1Q9Y6Y1 1673 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 AFF2P51816 1311 aa7.43□□□□□ -1.22
SYNE1-219ENST00000469439 BTBD11A6QL63 1104 aa7.42□□□□□ -1.22
SYNE1-219ENST00000469439 RNMTO43148 476 aaKnown RBP7.42□□□□□ -1.22
SYNE1-219ENST00000469439 ALDH1L2Q3SY69 923 aa7.42□□□□□ -1.22
SYNE1-219ENST00000469439 TRMT2AQ8IZ69 625 aaKnown RBP7.42□□□□□ -1.22
SYNE1-219ENST00000469439 DDX54Q8TDD1 881 aaKnown RBP7.42□□□□□ -1.22
SYNE1-219ENST00000469439 UBE2OQ9C0C9 1292 aaKnown RBP7.42□□□□□ -1.22
SYNE1-219ENST00000469439 TMOD3Q9NYL9 352 aa7.42□□□□□ -1.22
SYNE1-219ENST00000469439 RCAN3Q9UKA8 241 aa7.42□□□□□ -1.22
SYNE1-219ENST00000469439 HDAC5Q9UQL6 1122 aa7.42□□□□□ -1.22
SYNE1-219ENST00000469439 KIF16BQ96L93 1317 aa7.42□□□□□ -1.22
SYNE1-219ENST00000469439 PEAK1Q9H792 1746 aa7.41□□□□□ -1.22
SYNE1-219ENST00000469439 NWD2Q9ULI1 1742 aa7.41□□□□□ -1.22
SYNE1-219ENST00000469439 FAM229AH3BQW9 127 aa7.41□□□□□ -1.22
SYNE1-219ENST00000469439 CANXP27824 592 aaKnown RBP7.41□□□□□ -1.22
SYNE1-219ENST00000469439 RXRBP28702 533 aa7.41□□□□□ -1.22
SYNE1-219ENST00000469439 GATA4P43694 442 aa7.41□□□□□ -1.22
SYNE1-219ENST00000469439 CCDC30Q5VVM6 783 aa7.41□□□□□ -1.22
SYNE1-219ENST00000469439 DUSP27Q5VZP5 1158 aa7.41□□□□□ -1.22
SYNE1-219ENST00000469439 SLC52A2Q9HAB3 445 aa7.41□□□□□ -1.22
SYNE1-219ENST00000469439 KLK14Q9P0G3 267 aa7.41□□□□□ -1.22
SYNE1-219ENST00000469439 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms