RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 ROBO3Q96MS0 1386 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 USP17L12C9JPN9 530 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 USP17L21D6R901 530 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 WDHD1O75717 1129 aaPredicted RBP15.42■□□□□ 0.06
COL4A1-202ENST00000467182 HMGB1P09429 215 aaKnown RBP15.42■□□□□ 0.06
COL4A1-202ENST00000467182 FGRP09769 529 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 CYP2D6P10635 497 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 MCM2P49736 904 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 ANTXR2P58335 489 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 AKNAD1Q5T1N1 836 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 CIAPIN1Q6FI81 312 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 CDC42EP5Q6NZY7 148 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 DHX32Q7L7V1 743 aaKnown RBP15.42■□□□□ 0.06
COL4A1-202ENST00000467182 AGBL3Q8NEM8 1001 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 TGFBRAP1Q8WUH2 860 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 JDP2Q8WYK2 163 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 ARPP21Q9UBL0 812 aaPredicted RBP15.42■□□□□ 0.06
COL4A1-202ENST00000467182 ZBTB12Q9Y330 459 aaPredicted RBP15.42■□□□□ 0.06
COL4A1-202ENST00000467182 FLT1P17948 1338 aa15.42■□□□□ 0.06
COL4A1-202ENST00000467182 MINDY4BA8MYZ0 360 aa15.41■□□□□ 0.06
COL4A1-202ENST00000467182 SOCS7O14512 581 aa15.41■□□□□ 0.06
COL4A1-202ENST00000467182 USP17L8P0C7I0 530 aa15.41■□□□□ 0.06
COL4A1-202ENST00000467182 USP5P45974 858 aa15.41■□□□□ 0.06
COL4A1-202ENST00000467182 ARHGAP27Q6ZUM4 889 aa15.41■□□□□ 0.06
COL4A1-202ENST00000467182 MAPKAPK5Q8IW41 473 aa15.41■□□□□ 0.06
COL4A1-202ENST00000467182 NCOA7Q8NI08 942 aa15.41■□□□□ 0.06
COL4A1-202ENST00000467182 AGXT2Q9BYV1 514 aa15.41■□□□□ 0.06
COL4A1-202ENST00000467182 DDX4Q9NQI0 724 aaKnown RBP15.41■□□□□ 0.06
COL4A1-202ENST00000467182 USP40Q9NVE5 1235 aa15.41■□□□□ 0.06
COL4A1-202ENST00000467182 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.41■□□□□ 0.06
COL4A1-202ENST00000467182 SIPA1L1O43166 1804 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 LARGE1O95461 756 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 CFAP100Q494V2 611 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 C12orf60Q5U649 245 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 CYB5R4Q7L1T6 521 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 FBXL16Q8N461 479 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 TMX3Q96JJ7 454 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 MCM9Q9NXL9 1143 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 WDR19Q8NEZ3 1342 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 ZNF541Q9H0D2 1346 aa15.4■□□□□ 0.06
COL4A1-202ENST00000467182 LMNB1P20700 586 aa15.39■□□□□ 0.05
COL4A1-202ENST00000467182 CUL4AQ13619 759 aa15.39■□□□□ 0.05
COL4A1-202ENST00000467182 TNIP1Q15025 636 aa15.39■□□□□ 0.05
COL4A1-202ENST00000467182 Q6ZUG5 572 aa15.39■□□□□ 0.05
COL4A1-202ENST00000467182 NOL8Q76FK4 1167 aaKnown RBP15.39■□□□□ 0.05
COL4A1-202ENST00000467182 CHST3Q7LGC8 479 aa15.39■□□□□ 0.05
COL4A1-202ENST00000467182 ZBED3Q96IU2 234 aaPredicted RBP15.39■□□□□ 0.05
COL4A1-202ENST00000467182 PRMT6Q96LA8 375 aaPredicted RBP15.39■□□□□ 0.05
COL4A1-202ENST00000467182 LARP6Q9BRS8 491 aaKnown RBP15.39■□□□□ 0.05
COL4A1-202ENST00000467182 LRRC2Q9BYS8 371 aa15.39■□□□□ 0.05
COL4A1-202ENST00000467182 TPCN1Q9ULQ1 816 aa15.39■□□□□ 0.05
COL4A1-202ENST00000467182 SHTN1A0MZ66 631 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 B4E1Z4 1266 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 PRC1O43663 620 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 PLCD1P51178 756 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 ST3GAL1Q11201 340 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 NFIAQ12857 509 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 MFSD6Q6ZSS7 791 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 MTMR14Q8NCE2 650 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 IDI2Q9BXS1 227 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 SAP30BPQ9UHR5 308 aaKnown RBP15.38■□□□□ 0.05
COL4A1-202ENST00000467182 LIMCH1Q9UPQ0 1083 aa15.38■□□□□ 0.05
COL4A1-202ENST00000467182 SPDYE2BA6NHP3 402 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 ORC4O43929 436 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 NPM3O75607 178 aaKnown RBP15.37■□□□□ 0.05
COL4A1-202ENST00000467182 SPDYE6P0CI01 402 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 PCP11498 1178 aaKnown RBP15.37■□□□□ 0.05
COL4A1-202ENST00000467182 RPS12P25398 132 aaKnown RBP15.37■□□□□ 0.05
COL4A1-202ENST00000467182 MCM5P33992 734 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 DDIT3P35638 169 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 ZNF280AP59817 542 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-202ENST00000467182 ANKRD1Q15327 319 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 RALYLQ86SE5 291 aaKnown RBP15.37■□□□□ 0.05
COL4A1-202ENST00000467182 STK11IPQ8N1F8 1099 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 KRT23Q9C075 422 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 OSBPL5Q9H0X9 879 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-202ENST00000467182 RNF41Q9H4P4 317 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-202ENST00000467182 CNNM2Q9H8M5 875 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 GPHNQ9NQX3 736 aaPredicted RBP15.37■□□□□ 0.05
COL4A1-202ENST00000467182 ZSWIM5Q9P217 1185 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 FAM198AQ9UFP1 575 aa15.37■□□□□ 0.05
COL4A1-202ENST00000467182 KDM4AO75164 1064 aa15.36■□□□□ 0.05
COL4A1-202ENST00000467182 RBM5P52756 815 aaKnown RBP eCLIP15.36■□□□□ 0.05
COL4A1-202ENST00000467182 EIF6P56537 245 aaKnown RBP15.36■□□□□ 0.05
COL4A1-202ENST00000467182 EVCP57679 992 aa15.36■□□□□ 0.05
COL4A1-202ENST00000467182 TRDNQ13061 729 aa15.36■□□□□ 0.05
COL4A1-202ENST00000467182 PICALMQ13492 652 aa15.36■□□□□ 0.05
COL4A1-202ENST00000467182 ME3Q16798 604 aa15.36■□□□□ 0.05
COL4A1-202ENST00000467182 SLC4A8Q2Y0W8 1093 aa15.36■□□□□ 0.05
COL4A1-202ENST00000467182 SPRYD3Q8NCJ5 442 aa15.36■□□□□ 0.05
COL4A1-202ENST00000467182 ZSCAN31Q96LW9 406 aaPredicted RBP15.36■□□□□ 0.05
COL4A1-202ENST00000467182 TDRD3Q9H7E2 651 aaKnown RBP15.36■□□□□ 0.05
COL4A1-202ENST00000467182 DAXXQ9UER7 740 aaPredicted RBP15.36■□□□□ 0.05
COL4A1-202ENST00000467182 HDAC9Q9UKV0 1011 aa15.36■□□□□ 0.05
COL4A1-202ENST00000467182 COL2A1P02458 1487 aaPredicted RBP15.35■□□□□ 0.05
COL4A1-202ENST00000467182 SH2B2O14492 632 aaPredicted RBP15.35■□□□□ 0.05
COL4A1-202ENST00000467182 GMPSP49915 693 aaPredicted RBP15.35■□□□□ 0.05
COL4A1-202ENST00000467182 MMP14P50281 582 aa15.35■□□□□ 0.05
COL4A1-202ENST00000467182 CACNB3P54284 484 aa15.35■□□□□ 0.05
COL4A1-202ENST00000467182 SH3BP5LQ7L8J4 393 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms