RNA–Protein interactions for RNA: ENST00000465756.5

NPHP3-203, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 3,852 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-203ENST00000465756 CETPP11597 493 aa12.96□□□□□ -0.33
NPHP3-203ENST00000465756 MX1P20591 662 aa12.96□□□□□ -0.33
NPHP3-203ENST00000465756 WRNIP1Q96S55 665 aa12.96□□□□□ -0.33
NPHP3-203ENST00000465756 COL4A1P02462 1669 aa12.96□□□□□ -0.33
NPHP3-203ENST00000465756 TCP10Q12799 353 aa12.96□□□□□ -0.34
NPHP3-203ENST00000465756 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.96□□□□□ -0.34
NPHP3-203ENST00000465756 SNAPC2Q13487 334 aa12.95□□□□□ -0.34
NPHP3-203ENST00000465756 UBE3CQ15386 1083 aa12.95□□□□□ -0.34
NPHP3-203ENST00000465756 EGFRP00533 1210 aa12.95□□□□□ -0.34
NPHP3-203ENST00000465756 OSBPL5Q9H0X9 879 aaPredicted RBP12.95□□□□□ -0.34
NPHP3-203ENST00000465756 SH2D4AQ9H788 454 aa12.95□□□□□ -0.34
NPHP3-203ENST00000465756 NBPF12Q5TAG4 269 aaPredicted RBP12.95□□□□□ -0.34
NPHP3-203ENST00000465756 CST9Q5W186 159 aa12.95□□□□□ -0.34
NPHP3-203ENST00000465756 FASTKD5Q7L8L6 764 aaKnown RBP12.95□□□□□ -0.34
NPHP3-203ENST00000465756 PRDM10Q9NQV6 1147 aa12.95□□□□□ -0.34
NPHP3-203ENST00000465756 AATFQ9NY61 560 aaKnown RBP eCLIP12.94□□□□□ -0.34
NPHP3-203ENST00000465756 KIF23Q02241 960 aaPredicted RBP12.94□□□□□ -0.34
NPHP3-203ENST00000465756 TBC1D9Q6ZT07 1266 aa12.94□□□□□ -0.34
NPHP3-203ENST00000465756 WNK4Q96J92 1243 aa12.94□□□□□ -0.34
NPHP3-203ENST00000465756 ZCCHC17Q9NP64 241 aaKnown RBP12.94□□□□□ -0.34
NPHP3-203ENST00000465756 RASAL3Q86YV0 1011 aa12.94□□□□□ -0.34
NPHP3-203ENST00000465756 RUFY2Q8WXA3 655 aa12.94□□□□□ -0.34
NPHP3-203ENST00000465756 EVI5LQ96CN4 794 aa12.94□□□□□ -0.34
NPHP3-203ENST00000465756 PNMA3Q9UL41 463 aa12.94□□□□□ -0.34
NPHP3-203ENST00000465756 PDE6AP16499 860 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 LDLRAD1Q5T700 205 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 ATP8A2Q9NTI2 1148 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 TMOD4Q9NZQ9 345 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 COL2A1P02458 1487 aaPredicted RBP12.93□□□□□ -0.34
NPHP3-203ENST00000465756 CTNND1O60716 968 aaKnown RBP12.93□□□□□ -0.34
NPHP3-203ENST00000465756 CASC1Q6TDU7 716 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 TMEM39BQ9GZU3 492 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 SWAP70Q9UH65 585 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 TRIM6-TRIM34B2RNG4 842 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 CYP2E1P05181 493 aaPredicted RBP12.93□□□□□ -0.34
NPHP3-203ENST00000465756 PPATQ06203 517 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 PPIL2Q13356 520 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 SPRYD7Q5W111 196 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 KBTBD3Q8NAB2 608 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 ZFYVE28Q9HCC9 887 aa12.93□□□□□ -0.34
NPHP3-203ENST00000465756 CXCL11O14625 94 aa12.92□□□□□ -0.34
NPHP3-203ENST00000465756 TBC1D12O60347 775 aa12.92□□□□□ -0.34
NPHP3-203ENST00000465756 ASTN2O75129 1339 aaPredicted RBP12.92□□□□□ -0.34
NPHP3-203ENST00000465756 ASNSP08243 561 aa12.92□□□□□ -0.34
NPHP3-203ENST00000465756 ERICH6BQ5W0A0 696 aa12.92□□□□□ -0.34
NPHP3-203ENST00000465756 APPBP2Q92624 585 aa12.92□□□□□ -0.34
NPHP3-203ENST00000465756 RNF113AO15541 343 aaKnown RBP12.92□□□□□ -0.34
NPHP3-203ENST00000465756 APPP05067 770 aa12.92□□□□□ -0.34
NPHP3-203ENST00000465756 TGFBRAP1Q8WUH2 860 aa12.92□□□□□ -0.34
NPHP3-203ENST00000465756 ELP3Q9H9T3 547 aa12.92□□□□□ -0.34
NPHP3-203ENST00000465756 PIH1D3Q9NQM4 214 aaKnown RBP12.92□□□□□ -0.34
NPHP3-203ENST00000465756 DIAPH3Q9NSV4 1193 aa12.92□□□□□ -0.34
NPHP3-203ENST00000465756 SCYL3Q8IZE3 742 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 EXOC6Q8TAG9 804 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 GTF3C2Q8WUA4 911 aaPredicted RBP12.91□□□□□ -0.34
NPHP3-203ENST00000465756 AK9Q5TCS8 1911 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 NOL9Q5SY16 702 aaKnown RBP12.91□□□□□ -0.34
NPHP3-203ENST00000465756 DNAJC5GQ8N7S2 189 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 CCDC17Q96LX7 622 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 ZNF532Q9HCE3 1301 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 SPDYE5A6NIY4 337 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 NT5C2P49902 561 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 CACNB3P54284 484 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 PRAMEF18Q5VWM3 479 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 SIRT2Q8IXJ6 389 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 FEZ1Q99689 392 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 CWC22Q9HCG8 908 aaKnown RBP12.91□□□□□ -0.34
NPHP3-203ENST00000465756 WBP1LQ9NX94 342 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 PCDHB15Q9Y5E8 787 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 ECM29Q5VYK3 1845 aa12.91□□□□□ -0.34
NPHP3-203ENST00000465756 HTRA3P83110 453 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 CHD1LQ86WJ1 897 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 MAPKAPK5Q8IW41 473 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 ARPP21Q9UBL0 812 aaPredicted RBP12.9□□□□□ -0.34
NPHP3-203ENST00000465756 SMARCA5O60264 1052 aaPredicted RBP12.9□□□□□ -0.34
NPHP3-203ENST00000465756 TDO2P48775 406 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 GIMAP6Q6P9H5 292 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 CCAR1Q8IX12 1150 aaKnown RBP12.9□□□□□ -0.34
NPHP3-203ENST00000465756 ERO1AQ96HE7 468 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 TLR7Q9NYK1 1049 aaKnown RBP12.9□□□□□ -0.34
NPHP3-203ENST00000465756 USP2O75604 605 aaPredicted RBP12.9□□□□□ -0.34
NPHP3-203ENST00000465756 OSBPP22059 807 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 ADD2P35612 726 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 USP14P54578 494 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 SMC5Q8IY18 1101 aa12.9□□□□□ -0.34
NPHP3-203ENST00000465756 CCL15-CCL14A0A0B4J2E2 113 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 HOXD10P28358 340 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 CCL15Q16663 113 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 MIGA1Q8NAN2 632 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 OPTNQ96CV9 577 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 OTUD5Q96G74 571 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 PARK7Q99497 189 aaKnown RBP12.89□□□□□ -0.35
NPHP3-203ENST00000465756 MCM9Q9NXL9 1143 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 RFX7Q2KHR2 1363 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 USP17L5A8MUK1 530 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 PI16Q6UXB8 463 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.89□□□□□ -0.35
NPHP3-203ENST00000465756 EHD4Q9H223 541 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 SERPINB13Q9UIV8 391 aa12.89□□□□□ -0.35
NPHP3-203ENST00000465756 B4GALNT3Q6L9W6 998 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms