RNA–Protein interactions for RNA: ENST00000460928.1

ATPAF1-203, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 869 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-203ENST00000460928 HHIPQ96QV1 700 aa6.98□□□□□ -1.29
ATPAF1-203ENST00000460928 MAST1Q9Y2H9 1570 aa6.98□□□□□ -1.29
ATPAF1-203ENST00000460928 DHX29Q7Z478 1369 aaKnown RBP6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 HMX2A2RU54 273 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 BTBD11A6QL63 1104 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 RTEL1-TNFRSF6BF6WH68 1400 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 PLXNC1O60486 1568 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 TNFRSF21O75509 655 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 EDN3P14138 238 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 GRIK1P39086 918 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 ARL4DP49703 201 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 NLRP12P59046 1061 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 OSMRQ99650 979 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 ZKSCAN3Q9BRR0 538 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 RUSC1Q9BVN2 902 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 SOX17Q9H6I2 414 aaPredicted RBP6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 POLIQ9UNA4 740 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 SHANK2Q9UPX8 1470 aa6.97□□□□□ -1.29
ATPAF1-203ENST00000460928 CFAP65Q6ZU64 1925 aaKnown RBP6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 UHRF1BP1Q6BDS2 1440 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 PRR19A6NJB7 356 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 SART1O43290 800 aaKnown RBP6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 PHACTR2O75167 634 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 TRPA1O75762 1119 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 FAM13AO94988 1023 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 BMP3P12645 472 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 SPINK2P20155 84 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 SF3B2Q13435 895 aaKnown RBP6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 FDX2Q6P4F2 183 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 VN1R5Q7Z5H4 357 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 SLC7A3Q8WY07 619 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 BHLHE41Q9C0J9 482 aaPredicted RBP6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 BCL11AQ9H165 835 aa6.96□□□□□ -1.3
ATPAF1-203ENST00000460928 ANKRD30AQ9BXX3 1397 aa6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 SOWAHDA6NJG2 315 aa6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 SOX1O00570 391 aaPredicted RBP6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 EREGO14944 169 aa6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 SERPINB4P48594 390 aa6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 MTMR3Q13615 1198 aa6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 BEND4Q6ZU67 534 aa6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 SUGCTQ9HAC7 445 aa6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 ADGRL2O95490 1459 aa6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.95□□□□□ -1.3
ATPAF1-203ENST00000460928 MROH1Q8NDA8 1641 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 NAIPQ13075 1403 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 CLTCQ00610 1675 aaKnown RBP6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 FZD6O60353 706 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 EIF4EBP3O60516 100 aaPredicted RBP6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 IKBKEQ14164 716 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 HGSNATQ68CP4 663 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 DTX1Q86Y01 620 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 GJD3Q8N144 294 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 SMG8Q8ND04 991 aaKnown RBP6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 TMPRSS13Q9BYE2 586 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 DUOX2Q9NRD8 1548 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 REREQ9P2R6 1566 aa6.94□□□□□ -1.3
ATPAF1-203ENST00000460928 ANKRD50Q9ULJ7 1429 aa6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 CEP152O94986 1710 aa6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 AGLP35573 1532 aa6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 ERCC3P19447 782 aa6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 FKBP4Q02790 459 aaKnown RBP eCLIP6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 PEAR1Q5VY43 1037 aaPredicted RBP6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 KRTAP9-9Q9BYP9 154 aa6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 KRTAP9-4Q9BYQ2 154 aa6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 KCNF1Q9H3M0 494 aa6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 FOXD3Q9UJU5 478 aaPredicted RBP6.93□□□□□ -1.3
ATPAF1-203ENST00000460928 LOC100289279A0A1B0GTE1 492 aa6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 PAX4O43316 350 aa6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 TIAF1O95411 115 aa6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 GP2P55259 537 aaKnown RBP6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 DNAJC14Q6Y2X3 702 aaPredicted RBP6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 SHKBP1Q8TBC3 707 aa6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 BIN2Q9UBW5 565 aaPredicted RBP6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 OAS3Q9Y6K5 1087 aaKnown RBP6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 ZNF335Q9H4Z2 1342 aaPredicted RBP6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 ROCK1Q13464 1354 aa6.92□□□□□ -1.3
ATPAF1-203ENST00000460928 RBM47A0AV96 593 aaKnown RBP6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 GAS2O43903 313 aaKnown RBP6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 ESRRAP11474 423 aaPredicted RBP6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 MAP4P27816 1152 aaKnown RBP6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 IRAK1P51617 712 aa6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 AAMPQ13685 434 aa6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 CPSF6Q16630 551 aaKnown RBP eCLIP6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 NUTM2GQ5VZR2 741 aa6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 PCGF6Q9BYE7 350 aa6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 CYP4F12Q9HCS2 524 aa6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 RGS17Q9UGC6 210 aaPredicted RBP6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 WASHC2CQ9Y4E1 1318 aa6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 ERBINQ96RT1 1412 aa6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 ABCC3O15438 1527 aa6.91□□□□□ -1.3
ATPAF1-203ENST00000460928 RNF17Q9BXT8 1623 aaKnown RBP6.9□□□□□ -1.3
ATPAF1-203ENST00000460928 C3P01024 1663 aa6.9□□□□□ -1.3
ATPAF1-203ENST00000460928 GCC2Q8IWJ2 1684 aa6.9□□□□□ -1.3
ATPAF1-203ENST00000460928 SETD1BQ9UPS6 1966 aaKnown RBP6.9□□□□□ -1.3
ATPAF1-203ENST00000460928 ABL1P00519 1130 aa6.9□□□□□ -1.3
ATPAF1-203ENST00000460928 USP26Q9BXU7 913 aa6.9□□□□□ -1.3
ATPAF1-203ENST00000460928 NRSN2Q9GZP1 204 aa6.9□□□□□ -1.3
ATPAF1-203ENST00000460928 ZFYVE28Q9HCC9 887 aa6.9□□□□□ -1.3
ATPAF1-203ENST00000460928 NUP155O75694 1391 aa6.9□□□□□ -1.31
ATPAF1-203ENST00000460928 ZMYM3Q14202 1370 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms