RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TGFBR3LH3BV60 316 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 GREM1O60565 184 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 L1CAMP32004 1257 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 STK3Q13188 491 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC9A5Q14940 896 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 SART3Q15020 963 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 PTPN21Q16825 1174 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 NBPF1Q3BBV0 1214 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 COBLL1Q53SF7 1204 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 NECAB2Q7Z6G3 386 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 LRRTM3Q86VH5 581 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 TCEAL8Q8IYN2 117 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 PPM1KQ8N3J5 372 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 FBXO27Q8NI29 283 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 SLC6A16Q9GZN6 736 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 ZFYVE1Q9HBF4 777 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 BRMS1Q9HCU9 246 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 HCSTQ9UBK5 93 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 LUC7L2Q9Y383 392 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 SAMM50Q9Y512 469 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 PITPNM2Q9BZ72 1349 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 CFAP69A5D8W1 941 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 ADH1BP00325 375 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 F13A1P00488 732 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 CCNFP41002 786 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 MYBPC2Q14324 1141 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 ZC3H12BQ5HYM0 836 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 HGSNATQ68CP4 663 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 CREBRFQ8IUR6 639 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 TIFAQ96CG3 184 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 ELAC2Q9BQ52 826 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 ENAMQ9NRM1 1142 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 OBP2AQ9NY56 170 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 ABI2Q9NYB9 513 aaPredicted RBP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 NRBP1Q9UHY1 535 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 KLF15Q9UIH9 416 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 GJA3Q9Y6H8 435 aa2.86□□□□□ -1.95
CCDC88A-208ENST00000444458 KHNYNO15037 678 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 ZRANB2O95218 330 aaKnown RBP eCLIP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 HALP42357 657 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TMEM95Q3KNT9 176 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 GNASQ5JWF2 1037 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 BNC2Q6ZN30 1099 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 RNF180Q86T96 592 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 SPATS2Q86XZ4 545 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 C1orf127Q8N9H9 656 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 ZBTB38Q8NAP3 1195 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PPHLN1Q8NEY8 458 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 ZSCAN10Q96SZ4 725 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 KIF2CQ99661 725 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 HERPUD2Q9BSE4 406 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 CBX8Q9HC52 389 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PGPEP1Q9NXJ5 209 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TMEM63CQ9P1W3 806 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TRHDEQ9UKU6 1024 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 VPS9D1Q9Y2B5 631 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 F5H423 210 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PPEF1O14829 653 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TLL1O43897 1013 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 OPA1O60313 960 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 NBNO60934 754 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 ARAFP10398 606 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TATP17735 454 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PLA2G4AP47712 749 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TERF1P54274 439 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 MLECQ14165 292 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 MINDY4Q4G0A6 757 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 IQSEC1Q6DN90 963 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 VHLLQ6RSH7 139 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 LSRQ86X29 649 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 EHBP1Q8NDI1 1231 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 CCT6BQ92526 530 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TTC1Q99614 292 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 LIN7BQ9HAP6 207 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 KANSL3Q9P2N6 904 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TSR3Q9UJK0 312 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 FCF1Q9Y324 198 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 DNAJC25-GNG10A0A024R161 153 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 TMEM238LA0A1B0GVL6 79 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 FAM86C2PA6NEL3 165 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 GSG1L2A8MUP6 293 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 BRINP1O60477 761 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 KPNA6O60684 536 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PYGMP11217 842 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 SH3BP2P78314 561 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PDE1CQ14123 709 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 MPP2Q14168 576 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PUM3Q15397 648 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 SAFBQ15424 915 aaKnown RBP eCLIP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 SV2CQ496J9 727 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 MAATS1Q7Z4T9 603 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PNMA8AQ86V59 439 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 IFNL2Q8IZJ0 200 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PI4K2BQ8TCG2 481 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 CLIP3Q96DZ5 547 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 ESYT1Q9BSJ8 1104 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 CNNM2Q9H8M5 875 aa2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 SAP30BPQ9UHR5 308 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-208ENST00000444458 PPP2R3BQ9Y5P8 575 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms