RNA–Protein interactions for RNA: ENST00000441580.5

CPSF4-206, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2 BASIC

Gene CPSF4, Length 942 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-206ENST00000441580 IL1R1P14778 569 aa15.4■□□□□ 0.06
CPSF4-206ENST00000441580 FERMT3Q86UX7 667 aa15.4■□□□□ 0.06
CPSF4-206ENST00000441580 TXNRD3Q86VQ6 643 aa15.4■□□□□ 0.06
CPSF4-206ENST00000441580 COL23A1Q86Y22 540 aaPredicted RBP15.4■□□□□ 0.06
CPSF4-206ENST00000441580 ZNF384Q8TF68 577 aa15.4■□□□□ 0.06
CPSF4-206ENST00000441580 UBAC1Q9BSL1 405 aa15.4■□□□□ 0.06
CPSF4-206ENST00000441580 GPHNQ9NQX3 736 aaPredicted RBP15.4■□□□□ 0.06
CPSF4-206ENST00000441580 TOMM22Q9NS69 142 aa15.4■□□□□ 0.06
CPSF4-206ENST00000441580 TMEM63CQ9P1W3 806 aa15.4■□□□□ 0.06
CPSF4-206ENST00000441580 CFAP45Q9UL16 551 aa15.4■□□□□ 0.06
CPSF4-206ENST00000441580 SLC12A7Q9Y666 1083 aa15.4■□□□□ 0.06
CPSF4-206ENST00000441580 WTAPQ15007 396 aa15.39■□□□□ 0.05
CPSF4-206ENST00000441580 SBK1Q52WX2 424 aa15.39■□□□□ 0.05
CPSF4-206ENST00000441580 MICU3Q86XE3 530 aa15.39■□□□□ 0.05
CPSF4-206ENST00000441580 SLF2Q8IX21 1173 aa15.39■□□□□ 0.05
CPSF4-206ENST00000441580 SP8Q8IXZ3 490 aa15.39■□□□□ 0.05
CPSF4-206ENST00000441580 IGDCC4Q8TDY8 1250 aa15.39■□□□□ 0.05
CPSF4-206ENST00000441580 C8orf76Q96K31 380 aa15.39■□□□□ 0.05
CPSF4-206ENST00000441580 ZNF396Q96N95 335 aaPredicted RBP15.39■□□□□ 0.05
CPSF4-206ENST00000441580 ORC3Q9UBD5 711 aaPredicted RBP15.39■□□□□ 0.05
CPSF4-206ENST00000441580 NSFL1CQ9UNZ2 370 aaKnown RBP15.39■□□□□ 0.05
CPSF4-206ENST00000441580 ATP6V0A2Q9Y487 856 aa15.39■□□□□ 0.05
CPSF4-206ENST00000441580 MROH7-TTC4A0A0A0MT08 1334 aa15.39■□□□□ 0.05
CPSF4-206ENST00000441580 CCDC196A0A1B0GTZ2 297 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 ORC4O43929 436 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 BAG3O95817 575 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 FGRP09769 529 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 DYNLL1P63167 89 aaKnown RBP15.38■□□□□ 0.05
CPSF4-206ENST00000441580 PPP2R5BQ15173 497 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 RRP12Q5JTH9 1297 aaKnown RBP15.38■□□□□ 0.05
CPSF4-206ENST00000441580 LRSAM1Q6UWE0 723 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 BRAPQ7Z569 592 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 AMOTL1Q8IY63 956 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 TBC1D16Q8TBP0 767 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 WASF1Q92558 559 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 SPATA32Q96LK8 384 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 CD209Q9NNX6 404 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 AATFQ9NY61 560 aaKnown RBP eCLIP15.38■□□□□ 0.05
CPSF4-206ENST00000441580 RBM27Q9P2N5 1060 aaKnown RBP15.38■□□□□ 0.05
CPSF4-206ENST00000441580 MYH2Q9UKX2 1941 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 FOCADQ5VW36 1801 aa15.38■□□□□ 0.05
CPSF4-206ENST00000441580 MINDY4BA8MYZ0 360 aa15.37■□□□□ 0.05
CPSF4-206ENST00000441580 GADD45BO75293 160 aaPredicted RBP15.37■□□□□ 0.05
CPSF4-206ENST00000441580 MMP10P09238 476 aa15.37■□□□□ 0.05
CPSF4-206ENST00000441580 SRGNP10124 158 aa15.37■□□□□ 0.05
CPSF4-206ENST00000441580 PLCG2P16885 1265 aa15.37■□□□□ 0.05
CPSF4-206ENST00000441580 ALDH1B1P30837 517 aa15.37■□□□□ 0.05
CPSF4-206ENST00000441580 TTC6Q86TZ1 520 aa15.37■□□□□ 0.05
CPSF4-206ENST00000441580 TMX4Q9H1E5 349 aaPredicted RBP15.37■□□□□ 0.05
CPSF4-206ENST00000441580 DCP1AQ9NPI6 582 aaPredicted RBP15.37■□□□□ 0.05
CPSF4-206ENST00000441580 ZSWIM5Q9P217 1185 aa15.37■□□□□ 0.05
CPSF4-206ENST00000441580 CDK5RAP2Q96SN8 1893 aa15.37■□□□□ 0.05
CPSF4-206ENST00000441580 FDPSP14324 419 aaKnown RBP15.36■□□□□ 0.05
CPSF4-206ENST00000441580 RTN1Q16799 776 aa15.36■□□□□ 0.05
CPSF4-206ENST00000441580 CTR9Q6PD62 1173 aa15.36■□□□□ 0.05
CPSF4-206ENST00000441580 IQCA1Q86XH1 822 aa15.36■□□□□ 0.05
CPSF4-206ENST00000441580 LEO1Q8WVC0 666 aaPredicted RBP15.36■□□□□ 0.05
CPSF4-206ENST00000441580 MASTLQ96GX5 879 aa15.36■□□□□ 0.05
CPSF4-206ENST00000441580 COA1Q9GZY4 146 aa15.36■□□□□ 0.05
CPSF4-206ENST00000441580 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.36■□□□□ 0.05
CPSF4-206ENST00000441580 SUGT1Q9Y2Z0 365 aa15.36■□□□□ 0.05
CPSF4-206ENST00000441580 TNKSO95271 1327 aa15.36■□□□□ 0.05
CPSF4-206ENST00000441580 FAM205AQ6ZU69 1335 aa15.36■□□□□ 0.05
CPSF4-206ENST00000441580 SYCE3A1L190 88 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 GOLGA6L4A6NEF3 574 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 DDAH1O94760 285 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 CALM1P0DP23 149 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 CALM2P0DP24 149 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 CALM3P0DP25 149 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 XRCC6P12956 609 aaKnown RBP eCLIP15.35■□□□□ 0.05
CPSF4-206ENST00000441580 PPP4CP60510 307 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 PDE4BQ07343 736 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 GAS2L3Q86XJ1 694 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 TRIM22Q8IYM9 498 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 FBXO18Q8NFZ0 1043 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 ANP32BQ92688 251 aaKnown RBP15.35■□□□□ 0.05
CPSF4-206ENST00000441580 STK32BQ9NY57 414 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 TACC3Q9Y6A5 838 aa15.35■□□□□ 0.05
CPSF4-206ENST00000441580 C6orf229H3BNL8 230 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 DTNBO60941 627 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 IFNAR1P17181 557 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 IARSP41252 1262 aaKnown RBP15.34■□□□□ 0.05
CPSF4-206ENST00000441580 USP5P45974 858 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 NASPP49321 788 aaPredicted RBP15.34■□□□□ 0.05
CPSF4-206ENST00000441580 TRIM29Q14134 588 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 STYK1Q6J9G0 422 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 ZNF654Q8IZM8 581 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 ZSCAN10Q96SZ4 725 aaPredicted RBP15.34■□□□□ 0.05
CPSF4-206ENST00000441580 EYA3Q99504 573 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 TSPY26PQ9H489 355 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 DDX19AQ9NUU7 478 aaKnown RBP15.34■□□□□ 0.05
CPSF4-206ENST00000441580 GAKO14976 1311 aa15.34■□□□□ 0.05
CPSF4-206ENST00000441580 USP17L12C9JPN9 530 aa15.33■□□□□ 0.04
CPSF4-206ENST00000441580 USP17L21D6R901 530 aa15.33■□□□□ 0.04
CPSF4-206ENST00000441580 FMNL1O95466 1100 aaPredicted RBP15.33■□□□□ 0.04
CPSF4-206ENST00000441580 FOSBP53539 338 aa15.33■□□□□ 0.04
CPSF4-206ENST00000441580 SSRP1Q08945 709 aaKnown RBP15.33■□□□□ 0.04
CPSF4-206ENST00000441580 SEC23AQ15436 765 aa15.33■□□□□ 0.04
CPSF4-206ENST00000441580 CCDC178Q5BJE1 867 aa15.33■□□□□ 0.04
CPSF4-206ENST00000441580 RAB11FIP4Q86YS3 637 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms