RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 CCDC8Q9H0W5 538 aaPredicted RBP24.31■■□□□ 1.48
SHROOM1-204ENST00000440118 TESPA1A2RU30 521 aaPredicted RBP24.3■■□□□ 1.48
SHROOM1-204ENST00000440118 PPIL2Q13356 520 aa24.3■■□□□ 1.48
SHROOM1-204ENST00000440118 TAF1CQ15572 869 aaPredicted RBP24.3■■□□□ 1.48
SHROOM1-204ENST00000440118 NAA16Q6N069 864 aaPredicted RBP24.3■■□□□ 1.48
SHROOM1-204ENST00000440118 ZFPM1Q8IX07 1006 aa24.3■■□□□ 1.48
SHROOM1-204ENST00000440118 BRI3BPQ8WY22 251 aa24.3■■□□□ 1.48
SHROOM1-204ENST00000440118 MS4A4AQ96JQ5 239 aa24.3■■□□□ 1.48
SHROOM1-204ENST00000440118 PTPN18Q99952 460 aa24.3■■□□□ 1.48
SHROOM1-204ENST00000440118 DBNLQ9UJU6 430 aaKnown RBP24.3■■□□□ 1.48
SHROOM1-204ENST00000440118 AACSQ86V21 672 aa24.29■■□□□ 1.48
SHROOM1-204ENST00000440118 BCL11AQ9H165 835 aa24.29■■□□□ 1.48
SHROOM1-204ENST00000440118 TLR7Q9NYK1 1049 aaKnown RBP24.29■■□□□ 1.48
SHROOM1-204ENST00000440118 DOCK1Q14185 1865 aa24.29■■□□□ 1.48
SHROOM1-204ENST00000440118 APBB1O00213 710 aa24.28■■□□□ 1.48
SHROOM1-204ENST00000440118 IRF6O14896 467 aa24.28■■□□□ 1.48
SHROOM1-204ENST00000440118 PPATQ06203 517 aa24.28■■□□□ 1.48
SHROOM1-204ENST00000440118 EAF2Q96CJ1 260 aaPredicted RBP24.28■■□□□ 1.48
SHROOM1-204ENST00000440118 ERO1AQ96HE7 468 aa24.28■■□□□ 1.48
SHROOM1-204ENST00000440118 ZFYVE28Q9HCC9 887 aa24.28■■□□□ 1.48
SHROOM1-204ENST00000440118 PICK1Q9NRD5 415 aa24.28■■□□□ 1.48
SHROOM1-204ENST00000440118 BAG3O95817 575 aa24.27■■□□□ 1.48
SHROOM1-204ENST00000440118 MAP4K4O95819 1239 aaPredicted RBP24.27■■□□□ 1.48
SHROOM1-204ENST00000440118 RPAP2Q8IXW5 612 aaPredicted RBP24.27■■□□□ 1.48
SHROOM1-204ENST00000440118 TEX11Q8IYF3 940 aa24.27■■□□□ 1.48
SHROOM1-204ENST00000440118 ZNF384Q8TF68 577 aa24.27■■□□□ 1.48
SHROOM1-204ENST00000440118 DDX4Q9NQI0 724 aaKnown RBP24.27■■□□□ 1.48
SHROOM1-204ENST00000440118 ZAP70P43403 619 aa24.26■■□□□ 1.47
SHROOM1-204ENST00000440118 RHBDL3P58872 404 aa24.26■■□□□ 1.47
SHROOM1-204ENST00000440118 ZNF512BQ96KM6 892 aaPredicted RBP24.26■■□□□ 1.47
SHROOM1-204ENST00000440118 IL1RAPL2Q9NP60 686 aa24.26■■□□□ 1.47
SHROOM1-204ENST00000440118 ZNF112Q9UJU3 913 aa24.26■■□□□ 1.47
SHROOM1-204ENST00000440118 TRIM17Q9Y577 477 aa24.26■■□□□ 1.47
SHROOM1-204ENST00000440118 CDK5RAP2Q96SN8 1893 aa24.26■■□□□ 1.47
SHROOM1-204ENST00000440118 DDTLA6NHG4 134 aaPredicted RBP24.25■■□□□ 1.47
SHROOM1-204ENST00000440118 PLCG2P16885 1265 aa24.25■■□□□ 1.47
SHROOM1-204ENST00000440118 NOL9Q5SY16 702 aaKnown RBP24.25■■□□□ 1.47
SHROOM1-204ENST00000440118 FAM43AQ8N2R8 423 aa24.25■■□□□ 1.47
SHROOM1-204ENST00000440118 AATFQ9NY61 560 aaKnown RBP eCLIP24.25■■□□□ 1.47
SHROOM1-204ENST00000440118 HPS5Q9UPZ3 1129 aa24.25■■□□□ 1.47
SHROOM1-204ENST00000440118 IDH1O75874 414 aaKnown RBP24.24■■□□□ 1.47
SHROOM1-204ENST00000440118 CYP2E1P05181 493 aaPredicted RBP24.24■■□□□ 1.47
SHROOM1-204ENST00000440118 FBXO46Q6PJ61 603 aaPredicted RBP24.24■■□□□ 1.47
SHROOM1-204ENST00000440118 SH3BP5LQ7L8J4 393 aa24.24■■□□□ 1.47
SHROOM1-204ENST00000440118 ZBTB40Q9NUA8 1239 aa24.24■■□□□ 1.47
SHROOM1-204ENST00000440118 ATRNL1Q5VV63 1379 aa24.24■■□□□ 1.47
SHROOM1-204ENST00000440118 FOCADQ5VW36 1801 aa24.24■■□□□ 1.47
SHROOM1-204ENST00000440118 ATAD5Q96QE3 1844 aa24.24■■□□□ 1.47
SHROOM1-204ENST00000440118 SP3Q02447 781 aa24.23■■□□□ 1.47
SHROOM1-204ENST00000440118 SCYL3Q8IZE3 742 aa24.23■■□□□ 1.47
SHROOM1-204ENST00000440118 CLASRPQ8N2M8 674 aaKnown RBP24.23■■□□□ 1.47
SHROOM1-204ENST00000440118 RHPN1Q8TCX5 695 aa24.23■■□□□ 1.47
SHROOM1-204ENST00000440118 CD99L2Q8TCZ2 262 aa24.23■■□□□ 1.47
SHROOM1-204ENST00000440118 SH3RF3Q8TEJ3 882 aaPredicted RBP24.23■■□□□ 1.47
SHROOM1-204ENST00000440118 KIF1BPQ96EK5 621 aa24.23■■□□□ 1.47
SHROOM1-204ENST00000440118 NPM3O75607 178 aaKnown RBP24.22■■□□□ 1.47
SHROOM1-204ENST00000440118 PDE3AQ14432 1141 aa24.22■■□□□ 1.47
SHROOM1-204ENST00000440118 OSBPL5Q9H0X9 879 aaPredicted RBP24.22■■□□□ 1.47
SHROOM1-204ENST00000440118 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.22■■□□□ 1.47
SHROOM1-204ENST00000440118 ZCCHC17Q9NP64 241 aaKnown RBP24.22■■□□□ 1.47
SHROOM1-204ENST00000440118 PIH1D3Q9NQM4 214 aaKnown RBP24.22■■□□□ 1.47
SHROOM1-204ENST00000440118 COL2A1P02458 1487 aaPredicted RBP24.21■■□□□ 1.47
SHROOM1-204ENST00000440118 BTBD19C9JJ37 291 aa24.21■■□□□ 1.47
SHROOM1-204ENST00000440118 IFIT2P09913 472 aaKnown RBP24.21■■□□□ 1.47
SHROOM1-204ENST00000440118 SOX10P56693 466 aa24.21■■□□□ 1.47
SHROOM1-204ENST00000440118 IGSF3O75054 1194 aa24.2■■□□□ 1.46
SHROOM1-204ENST00000440118 MLLT1Q03111 559 aaPredicted RBP24.2■■□□□ 1.46
SHROOM1-204ENST00000440118 ARHGEF6Q15052 776 aa24.2■■□□□ 1.46
SHROOM1-204ENST00000440118 OTOP1Q7RTM1 612 aa24.2■■□□□ 1.46
SHROOM1-204ENST00000440118 TRIM34Q9BYJ4 488 aa24.2■■□□□ 1.46
SHROOM1-204ENST00000440118 FAM196BA6NMK8 535 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 PHF20L1A8MW92 1017 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 CYP7A1P22680 504 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 MAP3K12Q12852 859 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 C20orf194Q5TEA3 1177 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 EFCC1Q9HA90 598 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 KCNH4Q9UQ05 1017 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 NDUFB9Q9Y6M9 179 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 ZHX2Q9Y6X8 837 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 PTPRFP10586 1907 aa24.19■■□□□ 1.46
SHROOM1-204ENST00000440118 CTNND1O60716 968 aaKnown RBP24.18■■□□□ 1.46
SHROOM1-204ENST00000440118 RAB11FIP3O75154 756 aa24.18■■□□□ 1.46
SHROOM1-204ENST00000440118 KIF22Q14807 665 aa24.18■■□□□ 1.46
SHROOM1-204ENST00000440118 MAPKAPK5Q8IW41 473 aa24.18■■□□□ 1.46
SHROOM1-204ENST00000440118 MAGEB6Q8N7X4 407 aa24.18■■□□□ 1.46
SHROOM1-204ENST00000440118 TGFBRAP1Q8WUH2 860 aa24.18■■□□□ 1.46
SHROOM1-204ENST00000440118 MYH1P12882 1939 aa24.18■■□□□ 1.46
SHROOM1-204ENST00000440118 PHIPQ8WWQ0 1821 aa24.17■■□□□ 1.46
SHROOM1-204ENST00000440118 PDHXO00330 501 aa24.17■■□□□ 1.46
SHROOM1-204ENST00000440118 SLURP2P0DP57 97 aa24.17■■□□□ 1.46
SHROOM1-204ENST00000440118 PTPRAP18433 802 aa24.17■■□□□ 1.46
SHROOM1-204ENST00000440118 ANKRD23Q86SG2 305 aa24.17■■□□□ 1.46
SHROOM1-204ENST00000440118 ADGRA1Q86SQ6 560 aa24.17■■□□□ 1.46
SHROOM1-204ENST00000440118 FLT1P17948 1338 aa24.16■■□□□ 1.46
SHROOM1-204ENST00000440118 CXCL11O14625 94 aa24.16■■□□□ 1.46
SHROOM1-204ENST00000440118 TLR2O60603 784 aa24.16■■□□□ 1.46
SHROOM1-204ENST00000440118 TTF1Q15361 905 aaPredicted RBP24.16■■□□□ 1.46
SHROOM1-204ENST00000440118 GADL1Q6ZQY3 521 aa24.16■■□□□ 1.46
SHROOM1-204ENST00000440118 SIRT2Q8IXJ6 389 aa24.16■■□□□ 1.46
SHROOM1-204ENST00000440118 CRACR2BQ8N4Y2 399 aaPredicted RBP24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms