RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 SLC51AQ86UW1 340 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 VGLL2Q8N8G2 317 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 ZNF396Q96N95 335 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 POLR3EQ9NVU0 708 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 DDX41Q9UJV9 622 aaKnown RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 USP21Q9UK80 565 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 RIPOR2Q9Y4F9 1068 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 CPDO75976 1380 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 COL5A2P05997 1499 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 UBN2Q6ZU65 1347 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 ZNF532Q9HCE3 1301 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 DCCP43146 1447 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 BRWD3Q6RI45 1802 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 TAF1P21675 1872 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 SH2B2O14492 632 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 SLC3A2P08195 630 aaKnown RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 ATF3P18847 181 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 ITGA6P23229 1130 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 TOB1P50616 345 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 FANCCQ00597 558 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 TCIRG1Q13488 830 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 CCDC57Q2TAC2 916 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 SLC9C2Q5TAH2 1124 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 APOA5Q6Q788 366 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 TTLL11Q8NHH1 800 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 OXER1Q8TDS5 423 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 APPBP2Q92624 585 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 AKT1S1Q96B36 256 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 ALG1Q9BT22 464 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 OSBPL5Q9H0X9 879 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 A0A1W2PQ27 194 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 A0A1W2PQ64 194 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 A0A1W2PQD8 194 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 TCRBV5S4A2TA0A5A2 114 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 CIAO1O76071 339 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 ADD2P35612 726 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 NR5A1Q13285 461 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 IMMTQ16891 758 aaKnown RBP8.31□□□□□ -1.08
COL28A1-202ENST00000430711 EARS2Q5JPH6 523 aaKnown RBP8.31□□□□□ -1.08
COL28A1-202ENST00000430711 BRINP3Q76B58 766 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 TMEM139Q8IV31 216 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 FAM177A1Q8N128 213 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-202ENST00000430711 PIGBQ92521 554 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 PRDM11Q9NQV5 511 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 FANCLQ9NW38 375 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 IQSEC3Q9UPP2 1182 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-202ENST00000430711 HPSEQ9Y251 543 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 COL22A1Q8NFW1 1626 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-202ENST00000430711 CHD4Q14839 1912 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 A0A087X0B3 334 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 ZNF213O14771 459 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 CTAGE5O15320 804 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 SLFN14P0C7P3 912 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 NLRP12P59046 1061 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 MTF1Q14872 753 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 METTL24Q5JXM2 366 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 TRIM65Q6PJ69 517 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 IGDCC4Q8TDY8 1250 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 IRX2Q9BZI1 471 aaPredicted RBP8.31□□□□□ -1.08
COL28A1-202ENST00000430711 ARMT1Q9H993 441 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 LY9Q9HBG7 655 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 BAZ2BQ9UIF8 2168 aaKnown RBP8.31□□□□□ -1.08
COL28A1-202ENST00000430711 WDR17Q8IZU2 1322 aa8.31□□□□□ -1.08
COL28A1-202ENST00000430711 BTBD18B2RXH4 712 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 CPLX1O14810 134 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 SEC31AO94979 1220 aaKnown RBP8.3□□□□□ -1.08
COL28A1-202ENST00000430711 APPP05067 770 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 CSF1RP07333 972 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 PDE6AP16499 860 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 ATP2B1P20020 1258 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 SLC39A14Q15043 492 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 CCDC93Q567U6 631 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 SMIM5Q71RC9 77 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 ADGRA1Q86SQ6 560 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 NCOA7Q8NI08 942 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 TBC1D2BQ9UPU7 963 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 ZBTB1Q9Y2K1 713 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 PCDH11XQ9BZA7 1347 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 PCDH11YQ9BZA8 1340 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 ITGB4P16144 1822 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 YEATS4O95619 227 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 METAP2P50579 478 aaKnown RBP eCLIP8.3□□□□□ -1.08
COL28A1-202ENST00000430711 CCDC158Q5M9N0 1113 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 UTP14CQ5TAP6 766 aaKnown RBP8.3□□□□□ -1.08
COL28A1-202ENST00000430711 CCDC102BQ68D86 513 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 LDHAL6AQ6ZMR3 332 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 TOGARAM2Q6ZUX3 1019 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 NLRP10Q86W26 655 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 REXO1L1PQ8IX06 675 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 FBXL16Q8N461 479 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 PDILTQ8N807 584 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 WDR24Q96S15 920 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 DESI2Q9BSY9 194 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 ATG3Q9NT62 314 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 ZSWIM5Q9P217 1185 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 PCDHA5Q9Y5H7 936 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 ZMYM6O95789 1325 aa8.3□□□□□ -1.08
COL28A1-202ENST00000430711 ABCA3Q99758 1704 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 MYH3P11055 1940 aa8.29□□□□□ -1.08
COL28A1-202ENST00000430711 CYP2D7A0A087X1C5 515 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms