RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 GRIK5Q16478 980 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 ZNF772Q68DY9 489 aaPredicted RBP12.15□□□□□ -0.46
HDAC9-210ENST00000428307 CTR9Q6PD62 1173 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 SYNE3Q6ZMZ3 975 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 UBAC1Q9BSL1 405 aa12.15□□□□□ -0.46
HDAC9-210ENST00000428307 FAM217BQ9NTX9 383 aaPredicted RBP12.15□□□□□ -0.46
HDAC9-210ENST00000428307 RANBP6O60518 1105 aaKnown RBP12.14□□□□□ -0.47
HDAC9-210ENST00000428307 CPLX2Q6PUV4 134 aaKnown RBP12.14□□□□□ -0.47
HDAC9-210ENST00000428307 COL23A1Q86Y22 540 aaPredicted RBP12.14□□□□□ -0.47
HDAC9-210ENST00000428307 TDRD7Q8NHU6 1098 aaKnown RBP12.14□□□□□ -0.47
HDAC9-210ENST00000428307 BICD2Q8TD16 824 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 BRIP1Q9BX63 1249 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 DACT1Q9NYF0 836 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 DOCK2Q92608 1830 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 PDS5AQ29RF7 1337 aaKnown RBP12.14□□□□□ -0.47
HDAC9-210ENST00000428307 LDHBP07195 334 aaKnown RBP12.14□□□□□ -0.47
HDAC9-210ENST00000428307 DIXDC1Q155Q3 683 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 ZNF804AQ7Z570 1209 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 CMTR1Q8N1G2 835 aaKnown RBP12.14□□□□□ -0.47
HDAC9-210ENST00000428307 NUP133Q8WUM0 1156 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 ESR2Q92731 530 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 ALG1Q9BT22 464 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 CRNKL1Q9BZJ0 848 aaKnown RBP12.14□□□□□ -0.47
HDAC9-210ENST00000428307 DCP1AQ9NPI6 582 aaPredicted RBP12.14□□□□□ -0.47
HDAC9-210ENST00000428307 ANAPC4Q9UJX5 808 aa12.14□□□□□ -0.47
HDAC9-210ENST00000428307 BBOX1O75936 387 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 CDKL5O76039 1030 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 LETM1O95202 739 aaPredicted RBP12.13□□□□□ -0.47
HDAC9-210ENST00000428307 IARSP41252 1262 aaKnown RBP12.13□□□□□ -0.47
HDAC9-210ENST00000428307 NTRK3Q16288 839 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 SPTY2D1Q68D10 685 aaPredicted RBP12.13□□□□□ -0.47
HDAC9-210ENST00000428307 WDR66Q8TBY9 1149 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 GGA1Q9UJY5 639 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 C6orf229H3BNL8 230 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 NR1I2O75469 434 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 CYP2D6P10635 497 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 ZNF396Q96N95 335 aaPredicted RBP12.13□□□□□ -0.47
HDAC9-210ENST00000428307 SLC26A6Q9BXS9 759 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 CD209Q9NNX6 404 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 POLLQ9UGP5 575 aa12.13□□□□□ -0.47
HDAC9-210ENST00000428307 TNKSO95271 1327 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 KIF28PB7ZC32 967 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 PLSCR1O15162 318 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 NLGN1Q8N2Q7 840 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 RCOR1Q9UKL0 485 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 ATP2B4P23634 1241 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 HOXA10P31260 410 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-210ENST00000428307 ME1P48163 572 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 MSL1Q68DK7 614 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 OLFM4Q6UX06 510 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 CKAP2LQ8IYA6 745 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 TMTC2Q8N394 836 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 TRIM44Q96DX7 344 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-210ENST00000428307 NUP62CLQ9H1M0 184 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 MCM9Q9NXL9 1143 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 CACNA1SQ13698 1873 aa12.12□□□□□ -0.47
HDAC9-210ENST00000428307 CASZ1Q86V15 1759 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 RXRBP28702 533 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 SSRP1Q08945 709 aaKnown RBP12.11□□□□□ -0.47
HDAC9-210ENST00000428307 RTN1Q16799 776 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 KRT40Q6A162 431 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 ENAHQ8N8S7 591 aaPredicted RBP12.11□□□□□ -0.47
HDAC9-210ENST00000428307 TBC1D16Q8TBP0 767 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 AKT1S1Q96B36 256 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 ZSCAN10Q96SZ4 725 aaPredicted RBP12.11□□□□□ -0.47
HDAC9-210ENST00000428307 ATP8A2Q9NTI2 1148 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 BRWD3Q6RI45 1802 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 USP17L8P0C7I0 530 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 GUCY1A2P33402 732 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 KIF23Q02241 960 aaPredicted RBP12.11□□□□□ -0.47
HDAC9-210ENST00000428307 CCDC173Q0VFZ6 552 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 FAM47AQ5JRC9 791 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 ZNF654Q8IZM8 581 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 FANCBQ8NB91 859 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 SH3RF3Q8TEJ3 882 aaPredicted RBP12.11□□□□□ -0.47
HDAC9-210ENST00000428307 CRAMP1Q96RY5 1269 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 CLIC4Q9Y696 253 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 UBR3Q6ZT12 1888 aa12.11□□□□□ -0.47
HDAC9-210ENST00000428307 A0A1B0GUL6 1792 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 KLRG2A4D1S0 409 aaPredicted RBP12.1□□□□□ -0.47
HDAC9-210ENST00000428307 RIMBP2O15034 1052 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 NMT2O60551 498 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 MMP10P09238 476 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 USP5P45974 858 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 SEC23AQ15436 765 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 MYSM1Q5VVJ2 828 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 IQCA1Q86XH1 822 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 TNMDQ9H2S6 317 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 IFNAR1P17181 557 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 GNL2Q13823 731 aaKnown RBP12.1□□□□□ -0.47
HDAC9-210ENST00000428307 MAP3K11Q16584 847 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 IFIT1BQ5T764 474 aaKnown RBP12.1□□□□□ -0.47
HDAC9-210ENST00000428307 ATL3Q6DD88 541 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 C15orf52Q6ZUT6 534 aaKnown RBP12.1□□□□□ -0.47
HDAC9-210ENST00000428307 CCAR1Q8IX12 1150 aaKnown RBP12.1□□□□□ -0.47
HDAC9-210ENST00000428307 PPP1R9BQ96SB3 815 aa12.1□□□□□ -0.47
HDAC9-210ENST00000428307 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.09□□□□□ -0.47
HDAC9-210ENST00000428307 PPEF1O14829 653 aaPredicted RBP12.09□□□□□ -0.47
HDAC9-210ENST00000428307 TRIM29Q14134 588 aa12.09□□□□□ -0.47
HDAC9-210ENST00000428307 SF3A1Q15459 793 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms