RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PDZD4Q76G19 769 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-204ENST00000423058 ANKRD36BQ8N2N9 1353 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 FANCAO15360 1455 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 A6NNZ2 444 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 GNPATO15228 680 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 ALDH1L1O75891 902 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 NEDD9Q14511 834 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 TUBB8Q3ZCM7 444 aa7.64□□□□□ -1.19
SCN1A-204ENST00000423058 DNAJC21Q5F1R6 531 aaKnown RBP7.64□□□□□ -1.19
SCN1A-204ENST00000423058 GBP7Q8N8V2 638 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-204ENST00000423058 SCAF11Q99590 1463 aaKnown RBP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 SPDYE16A6NNV3 312 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 HMGB3O15347 200 aaKnown RBP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 SPDYE2Q495Y8 402 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 GKAP1Q5VSY0 366 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 SEPT14Q6ZU15 432 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 ZNF365Q70YC5 407 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 MAIP1Q8WWC4 291 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 MED10Q9BTT4 135 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 LUC7L2Q9Y383 392 aaKnown RBP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 ATP2C2O75185 946 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 MCTP2Q6DN12 878 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 GBP6Q6ZN66 633 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 LARGE2Q8N3Y3 721 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 PRIMPOLQ96LW4 560 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 TRIM56Q9BRZ2 755 aaKnown RBP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 CHPF2Q9P2E5 772 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 TSPOAP1O95153 1857 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 ZEB2O60315 1214 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 MYCLP12524 364 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 KRT10P13645 584 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 SYT1P21579 422 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 IRX4P78413 519 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 XAGE3Q8WTP9 111 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 IRS4O14654 1257 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 PHLDB2Q86SQ0 1253 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 MIPOL1Q8TD10 442 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 THUMPD2Q9BTF0 503 aaKnown RBP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 PLCB1Q9NQ66 1216 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 GNPTABQ3T906 1256 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 PARP10Q53GL7 1025 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 SYCE1Q8N0S2 351 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 TRPC6Q9Y210 931 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 SPTLC2O15270 562 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 GTF2F1P35269 517 aaKnown RBP eCLIP7.63□□□□□ -1.19
SCN1A-204ENST00000423058 BMP2KLQ5H9B9 411 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 USP48Q86UV5 1035 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 PPP4R1Q8TF05 950 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 TTC41PQ6P2S7 1318 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 TRAF5O00463 557 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 IFT81Q8WYA0 676 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 TTLL3Q9Y4R7 772 aa7.63□□□□□ -1.19
SCN1A-204ENST00000423058 KIF1BO60333 1816 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 CHRNA2Q15822 529 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 KSR2Q6VAB6 950 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 GPATCH11Q8N954 259 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 CSRNP1Q96S65 589 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 TTC1Q99614 292 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 NUP58Q9BVL2 599 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 UFL1O94874 794 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 TMOD1P28289 359 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 YARSP54577 528 aaKnown RBP7.62□□□□□ -1.19
SCN1A-204ENST00000423058 PPP2R5CQ13362 524 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 ASIC2Q16515 512 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 ANO6Q4KMQ2 910 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 TTC22Q5TAA0 569 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 DCAF15Q66K64 600 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 DPP8Q6V1X1 898 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-204ENST00000423058 VCX3AQ9NNX9 186 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 IQSEC3Q9UPP2 1182 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-204ENST00000423058 EBAG9O00559 213 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 IPO4Q8TEX9 1081 aaKnown RBP7.62□□□□□ -1.19
SCN1A-204ENST00000423058 ZSWIM4Q9H7M6 989 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 ACEP12821 1306 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 MAP3K21Q5TCX8 1036 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 PALM2Q8IXS6 379 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 DNM3Q9UQ16 869 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 PLCH2O75038 1416 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 TRPM2O94759 1503 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 HMGXB3Q12766 1538 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 GOLGA8QA0A0J9YX86 632 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 GOLGA8OA6NCC3 632 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 SMIM23A6NLE4 172 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 GOLGA8NF8WBI6 632 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 H0YCG3 227 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 CAPN9O14815 690 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 TUBB2AQ13885 445 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 MCM6Q14566 821 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 B4GALNT4Q76KP1 1039 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 COPS6Q7L5N1 327 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 RSRC1Q96IZ7 334 aaKnown RBP7.62□□□□□ -1.19
SCN1A-204ENST00000423058 TUBB2BQ9BVA1 445 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 SOS1Q07889 1333 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-204ENST00000423058 THOC2Q8NI27 1593 aaKnown RBP7.62□□□□□ -1.19
SCN1A-204ENST00000423058 RNF113AO15541 343 aaKnown RBP7.62□□□□□ -1.19
SCN1A-204ENST00000423058 XPAP23025 273 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-204ENST00000423058 FAM47CQ5HY64 1035 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 NLRX1Q86UT6 975 aa7.62□□□□□ -1.19
SCN1A-204ENST00000423058 ABI1Q8IZP0 508 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms