RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 LAMA4Q16363 1823 aa12.71□□□□□ -0.37
DDX56-203ENST00000421223 ZNF500O60304 480 aaPredicted RBP12.71□□□□□ -0.38
DDX56-203ENST00000421223 KIF23Q02241 960 aaPredicted RBP12.71□□□□□ -0.38
DDX56-203ENST00000421223 EVX2Q03828 476 aa12.71□□□□□ -0.38
DDX56-203ENST00000421223 FAM160A1Q05DH4 1040 aa12.71□□□□□ -0.38
DDX56-203ENST00000421223 LINC00301Q8NCQ3 95 aa12.71□□□□□ -0.38
DDX56-203ENST00000421223 ARHGEF1Q92888 912 aaKnown RBP12.71□□□□□ -0.38
DDX56-203ENST00000421223 KRT23Q9C075 422 aa12.71□□□□□ -0.38
DDX56-203ENST00000421223 BSDC1Q9NW68 430 aaPredicted RBP12.71□□□□□ -0.38
DDX56-203ENST00000421223 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.7□□□□□ -0.38
DDX56-203ENST00000421223 RTN1Q16799 776 aa12.7□□□□□ -0.38
DDX56-203ENST00000421223 ANO1Q5XXA6 986 aa12.7□□□□□ -0.38
DDX56-203ENST00000421223 TXNRD3Q86VQ6 643 aa12.7□□□□□ -0.38
DDX56-203ENST00000421223 NRBP1Q9UHY1 535 aa12.7□□□□□ -0.38
DDX56-203ENST00000421223 PTGS1P23219 599 aa12.7□□□□□ -0.38
DDX56-203ENST00000421223 PRDX5P30044 214 aa12.7□□□□□ -0.38
DDX56-203ENST00000421223 SNW1Q13573 536 aaKnown RBP12.7□□□□□ -0.38
DDX56-203ENST00000421223 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.7□□□□□ -0.38
DDX56-203ENST00000421223 CLIC6Q96NY7 704 aa12.7□□□□□ -0.38
DDX56-203ENST00000421223 CNNM2Q9H8M5 875 aa12.7□□□□□ -0.38
DDX56-203ENST00000421223 RTEL1Q9NZ71 1219 aa12.7□□□□□ -0.38
DDX56-203ENST00000421223 AKAP11Q9UKA4 1901 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 BTBD18B2RXH4 712 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 USP17L12C9JPN9 530 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 USP17L21D6R901 530 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 GNAT2P19087 354 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 HIBADHP31937 336 aaKnown RBP12.69□□□□□ -0.38
DDX56-203ENST00000421223 UBE4AQ14139 1066 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 VPS72Q15906 364 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 TRIM22Q8IYM9 498 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 NARFQ9UHQ1 456 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 RPS6KA4O75676 772 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 SF3B3Q15393 1217 aaKnown RBP12.69□□□□□ -0.38
DDX56-203ENST00000421223 FAM196AQ6ZSG2 479 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 CCDC186Q7Z3E2 898 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 FAM217BQ9NTX9 383 aaPredicted RBP12.69□□□□□ -0.38
DDX56-203ENST00000421223 PHLPP1O60346 1717 aa12.69□□□□□ -0.38
DDX56-203ENST00000421223 AKAP17AQ02040 695 aaKnown RBP12.68□□□□□ -0.38
DDX56-203ENST00000421223 ALX1Q15699 326 aa12.68□□□□□ -0.38
DDX56-203ENST00000421223 FAM47AQ5JRC9 791 aa12.68□□□□□ -0.38
DDX56-203ENST00000421223 ADALQ6DHV7 355 aa12.68□□□□□ -0.38
DDX56-203ENST00000421223 KCNG4Q8TDN1 519 aa12.68□□□□□ -0.38
DDX56-203ENST00000421223 TAF1P21675 1872 aa12.68□□□□□ -0.38
DDX56-203ENST00000421223 SAFBQ15424 915 aaKnown RBP eCLIP12.68□□□□□ -0.38
DDX56-203ENST00000421223 BRAPQ7Z569 592 aa12.68□□□□□ -0.38
DDX56-203ENST00000421223 FBXL16Q8N461 479 aa12.68□□□□□ -0.38
DDX56-203ENST00000421223 TNKSO95271 1327 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 MYH3P11055 1940 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 GOLGA6L6A8MZA4 724 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 TPM2P07951 284 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 TRAPPC3LQ5T215 181 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 AOPEPQ8N6M6 819 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 ESR2Q92731 530 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 NYXQ9GZU5 481 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 RNF41Q9H4P4 317 aaPredicted RBP12.67□□□□□ -0.38
DDX56-203ENST00000421223 NWD2Q9ULI1 1742 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 GOLGB1Q14789 3259 aaKnown RBP12.67□□□□□ -0.38
DDX56-203ENST00000421223 NMT2O60551 498 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 WDHD1O75717 1129 aaPredicted RBP12.67□□□□□ -0.38
DDX56-203ENST00000421223 ZNF202O95125 648 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 MECOMQ03112 1051 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 LRMPQ12912 555 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 NR5A1Q13285 461 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 STX1AQ16623 288 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 FILIP1Q7Z7B0 1213 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 ZNF654Q8IZM8 581 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 AHDC1Q5TGY3 1603 aaPredicted RBP12.67□□□□□ -0.38
DDX56-203ENST00000421223 CYP2D6P10635 497 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 NTRK3Q16288 839 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 DZIP1Q86YF9 867 aaKnown RBP12.67□□□□□ -0.38
DDX56-203ENST00000421223 ENGASEQ8NFI3 743 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 PYCARDQ9ULZ3 195 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 EP400Q96L91 3159 aa12.67□□□□□ -0.38
DDX56-203ENST00000421223 SLC3A2P08195 630 aaKnown RBP12.66□□□□□ -0.38
DDX56-203ENST00000421223 LIFRP42702 1097 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 NOLC1Q14978 699 aaKnown RBP eCLIP12.66□□□□□ -0.38
DDX56-203ENST00000421223 ATL3Q6DD88 541 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 DIS3L2Q8IYB7 885 aaKnown RBP12.66□□□□□ -0.38
DDX56-203ENST00000421223 FANCBQ8NB91 859 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 STAG1Q8WVM7 1258 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 ARID3AQ99856 593 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 SPEF2Q9C093 1822 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 ZNF804BA4D1E1 1349 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 BAZ2BQ9UIF8 2168 aaKnown RBP12.66□□□□□ -0.38
DDX56-203ENST00000421223 CTAGE5O15320 804 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 PFKFB1P16118 471 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 IFIT1BQ5T764 474 aaKnown RBP12.66□□□□□ -0.38
DDX56-203ENST00000421223 SGMS1Q86VZ5 419 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 FMR1NBQ8N0W7 255 aaPredicted RBP12.66□□□□□ -0.38
DDX56-203ENST00000421223 PDILTQ8N807 584 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 POLR3EQ9NVU0 708 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 ANO10Q9NW15 660 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 CLIP2Q9UDT6 1046 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 PLCH1Q4KWH8 1693 aa12.66□□□□□ -0.38
DDX56-203ENST00000421223 WDR19Q8NEZ3 1342 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 COL4A1P02462 1669 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 TERF1P54274 439 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 ZNF384Q8TF68 577 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 VPS54Q9P1Q0 977 aa12.65□□□□□ -0.38
DDX56-203ENST00000421223 PNPLA7Q6ZV29 1317 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms